DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and lgc-44

DIOPT Version :10

Sequence 1:NP_648984.2 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_505954.2 Gene:lgc-44 / 179600 WormBaseID:WBGene00009790 Length:618 Species:Caenorhabditis elegans


Alignment Length:342 Identity:83/342 - (24%)
Similarity:154/342 - (45%) Gaps:45/342 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 RPFEYDSDGKRLP--------IVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNR 118
            |..|||:   |.|        :.||..|.|..:.|.....:.:.:.|.:::.:.|.||.:   :.
 Worm   255 RKMEYDA---RQPPSLHVDDTVTVKVGIAVQSMSNFELSTMDYDLDAWVRMSWIDPRLRH---DL 313

  Fly   119 SDNILGQKH-LSERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQAS------LY 176
            |..||...: ..:.:|.|...|.|.:.|:.......:....:.|:|.:.:..|:...      :.
 Worm   314 SRPILVNDYTFLKMIWRPDPIFTNSKYSTFHKVTYLNFYLFIFPDGKIFMDMRVYLKPTAAQIVL 378

  Fly   177 CWMNFQKFPFDQQFCSTVLESWMYNTSDLI-LEW--EPHTPISFDPEMRLTEYNMAQFWHNTTIV 238
            |     |:|.|....|..:.| |..|.|:: |||  :.:..|..:..:::.|.::.....:|.  
 Worm   379 C-----KYPHDNPAVSLKISS-MGFTQDVVKLEWFSDTNDAIWIEKNVKIPELSIRHLHPDTC-- 435

  Fly   239 QSDGDNLRHGAFAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLG 303
                :.:|.   :|.||.|.....:.||:|:::.:.|:|:.:.|..||:|.||..:....||.:.
 Worm   436 ----NGVRK---SGVYSCLEAKFYMHREVGYHIANTYIPTAICVVFSWISVWLPEEFVEGRIFVS 493

  Fly   304 TSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTIWRRKENIELKKVN- 367
            .:..|:....::|..:.||||||:|..::||...:.|:|.::::...|.::....:.:.||..| 
 Worm   494 LTVFLTLSAENNSAKEELPKVSYVKAIDIWFGFTSTFVFLTMLQALVVISLEHNSKRLRLKFENN 558

  Fly   368 ----SKY-IIKSTLTPR 379
                ||| :.||.|..|
 Worm   559 LDGYSKYQMTKSMLLSR 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_648984.2 LIC 43..505 CDD:455710 83/342 (24%)
lgc-44NP_505954.2 LGIC_ECD_anion 273..456 CDD:349788 40/200 (20%)
Cys-loop 374..388 CDD:349788 4/18 (22%)
LGIC_TM_anion 459..603 CDD:349851 34/117 (29%)
TM1 helix 459..482 CDD:349851 7/22 (32%)
TM2 helix 486..510 CDD:349851 4/23 (17%)
TM3 helix 518..579 CDD:349851 16/58 (28%)
TM4 helix 580..603 CDD:349851
Blue background indicates that the domain is not in the aligned region.

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