DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and lgc-44

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_505954.2 Gene:lgc-44 / 179600 WormBaseID:WBGene00009790 Length:618 Species:Caenorhabditis elegans


Alignment Length:342 Identity:83/342 - (24%)
Similarity:154/342 - (45%) Gaps:45/342 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 RPFEYDSDGKRLP--------IVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNR 118
            |..|||:   |.|        :.||..|.|..:.|.....:.:.:.|.:::.:.|.||.:   :.
 Worm   255 RKMEYDA---RQPPSLHVDDTVTVKVGIAVQSMSNFELSTMDYDLDAWVRMSWIDPRLRH---DL 313

  Fly   119 SDNILGQKH-LSERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQAS------LY 176
            |..||...: ..:.:|.|...|.|.:.|:.......:....:.|:|.:.:..|:...      :.
 Worm   314 SRPILVNDYTFLKMIWRPDPIFTNSKYSTFHKVTYLNFYLFIFPDGKIFMDMRVYLKPTAAQIVL 378

  Fly   177 CWMNFQKFPFDQQFCSTVLESWMYNTSDLI-LEW--EPHTPISFDPEMRLTEYNMAQFWHNTTIV 238
            |     |:|.|....|..:.| |..|.|:: |||  :.:..|..:..:::.|.::.....:|.  
 Worm   379 C-----KYPHDNPAVSLKISS-MGFTQDVVKLEWFSDTNDAIWIEKNVKIPELSIRHLHPDTC-- 435

  Fly   239 QSDGDNLRHGAFAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLG 303
                :.:|.   :|.||.|.....:.||:|:::.:.|:|:.:.|..||:|.||..:....||.:.
 Worm   436 ----NGVRK---SGVYSCLEAKFYMHREVGYHIANTYIPTAICVVFSWISVWLPEEFVEGRIFVS 493

  Fly   304 TSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTIWRRKENIELKKVN- 367
            .:..|:....::|..:.||||||:|..::||...:.|:|.::::...|.::....:.:.||..| 
 Worm   494 LTVFLTLSAENNSAKEELPKVSYVKAIDIWFGFTSTFVFLTMLQALVVISLEHNSKRLRLKFENN 558

  Fly   368 ----SKY-IIKSTLTPR 379
                ||| :.||.|..|
 Worm   559 LDGYSKYQMTKSMLLSR 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 83/342 (24%)
Neur_chan_LBD 44..267 CDD:280998 47/222 (21%)
Neur_chan_memb 275..503 CDD:280999 34/111 (31%)
lgc-44NP_505954.2 Neur_chan_LBD 259..>417 CDD:280998 37/169 (22%)
Neur_chan_memb 464..>550 CDD:280999 24/85 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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