DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and acc-4

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_001379219.1 Gene:acc-4 / 176778 WormBaseID:WBGene00012099 Length:408 Species:Caenorhabditis elegans


Alignment Length:517 Identity:121/517 - (23%)
Similarity:202/517 - (39%) Gaps:142/517 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LILVLSIWTSVG---VKAEEEE-------CPSMADAGSLQQTQ--------LIQRLTHVCRYDRL 60
            :|||:||..|..   :::.|::       ||..|...|:..|:        :|.::  :..|::|
 Worm     4 IILVISILISNAGSLLRSLEDDSNECMFNCPKRARNVSVPHTEKTCMGDDAIIAQI--LDGYNKL 66

  Fly    61 ERPFEYDSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFN--RSDNIL 123
            :.|    ..|.   :||...|:|..:..:.....:|::...:..|:.|..|||...|  :|:..:
 Worm    67 DLP----GGGH---VVVSIEIWVQEVSKIIEITSEFELDIYVTERWTDPSLAYSHLNPCKSNMSV 124

  Fly   124 GQKHLSERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQ 188
            ....:..::|.||..|.|.:.::|..:..|::...:...|::..:.|::.:..|....:.||.||
 Worm   125 DGATILNKIWNPHACFVNSKLANIHESPFKNIFLQIYSNGSIWHNYRIKLTGPCSSTLRTFPIDQ 189

  Fly   189 QFCSTVLESWMYNTSDLILEWEPHTP--ISFDPEMRLTEYNMAQFWHNTTIVQSDGDNLRHGAFA 251
            |.|....||:.:||..:.:||....|  ......:.|.:|.:..|        |....||... .
 Worm   190 QRCMLFYESFTHNTDQVKMEWITTVPPITILKGNITLPDYVLVDF--------SSSSELRLYP-P 245

  Fly   252 GNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSS 316
            |.::.|..|...:|..|||:|..|:|:.:.|.||||||.|.|:..|.|..:|.:::|:......:
 Worm   246 GIFNELIATFTFQRLYGFYILQVYVPAYISVFISWVSFTLGAEQIPSRTTVGVNSLLALTFQFGA 310

  Fly   317 QSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTIWRRKENIELKKVNSKYIIKSTLTPRPA 381
            ...||||.|.:|..:||.|....|||.||:|.|.|                              
 Worm   311 VVNNLPKTSDVKAIDVWILSSMAFIFASLIELAVV------------------------------ 345

  Fly   382 RRQIGGSLSNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPIIRTECAEADTVS 446
                 |.||.:.:..|                                     |:..|:     .
 Worm   346 -----GYLSRDGQHGS-------------------------------------IKCRCS-----W 363

  Fly   447 ICSARTNNDHIVDVDKDKKDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYWTFVYV 508
            :|             .:.||.           .|:.||:.|..:||..|||||..|| |:::
 Worm   364 LC-------------MNCKDW-----------TALKIDQMSSIVFPVSFLAFNIWYW-FIFL 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 109/473 (23%)
Neur_chan_LBD 44..267 CDD:280998 51/234 (22%)
Neur_chan_memb 275..503 CDD:280999 52/227 (23%)
acc-4NP_001379219.1 LGIC_ECD_GABAAR 74..259 CDD:349791 44/193 (23%)
LGIC_TM_anion 263..396 CDD:349851 55/233 (24%)
TM1 helix 266..286 CDD:349851 10/19 (53%)
TM2 helix 295..316 CDD:349851 3/20 (15%)
TM3 helix 326..348 CDD:349851 12/56 (21%)
TM4 helix 375..396 CDD:349851 10/20 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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