DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and avr-14

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_001020963.1 Gene:avr-14 / 172270 WormBaseID:WBGene00000232 Length:430 Species:Caenorhabditis elegans


Alignment Length:524 Identity:142/524 - (27%)
Similarity:231/524 - (44%) Gaps:134/524 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 TLILVLSIWTSVGVKAEEEECPSMADAGSLQQTQLIQRLTHVCRYDRLERPFEY-----DSDGKR 72
            |::|::||..|:..|.:            |::.::|||:  :..||...||...     |:.|  
 Worm     8 TILLIISIIHSIRAKRK------------LKEQEIIQRI--LKDYDWRVRPRGMNATWPDTGG-- 56

  Fly    73 LPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDN-------ILGQKH--- 127
             |::|...||:..:..::...:::......:..:.|:||||:.:..|.:       :|....   
 Worm    57 -PVLVTVNIYLRSISKIDDVNMEYSAQFTFREEWTDQRLAYERYEESGDTEVPPFVVLATSENAD 120

  Fly   128 LSERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCS 192
            .|:::|:|..||.||:|:.....|:.:||..:...|.::.|.|:...|.|.|:.:.:|.|:|.|.
 Worm   121 QSQQIWMPDTFFQNEKEARRHLIDKPNVLIRIHKNGQILYSVRLSLVLSCPMSLEFYPLDRQNCL 185

  Fly   193 TVLESWMYNTSDLILEWEPHTPI-----------SFDPEMRLTEYNMAQFWHNTTIVQSDGDNLR 246
            ..|.|:.|.|.|:..||:...||           ||:.:..:|:|       .|::..:      
 Worm   186 IDLASYAYTTQDIKYEWKEKKPIQQKDGLRQSLPSFELQDVVTDY-------CTSLTNT------ 237

  Fly   247 HGAFAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFI 311
                 |.||.....:.|:||..:||:..|:|.:|:|.:|||||||..||.|.|:.||.:|:|:..
 Worm   238 -----GEYSCARVVLRLRREYSYYLIQLYIPCIMLVVVSWVSFWLDKDAVPARVSLGVTTLLTMT 297

  Fly   312 TLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTIWRRKENIELKKVNSKYIIKSTL 376
            |.:|..:..||.|||||..:||...|..||||:|:|:|.|| .:.|||.:. |:...|..|...:
 Worm   298 TQASGINSKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVVN-YYGRKEFLR-KEKKKKTRIDDCV 360

  Fly   377 TP--RPARRQIGGSLSNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPIIRTEC 439
            .|  ||..|                 ||  :|:..||:                  .||||: ..
 Worm   361 CPSDRPPLR-----------------LD--LSAYRSVK------------------RLPIIK-RI 387

  Fly   440 AEADTVSICSARTNNDHIVDVDKDKKDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYWT 504
            :|..:.:|                              :|:..:|..||..||..|.:|...|:.
 Worm   388 SEILSTNI------------------------------DISRRVDLMSRLTFPLTFFSFLIFYYV 422

  Fly   505 FVYV 508
             .||
 Worm   423 -AYV 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 133/489 (27%)
Neur_chan_LBD 44..267 CDD:280998 60/248 (24%)
Neur_chan_memb 275..503 CDD:280999 69/229 (30%)
avr-14NP_001020963.1 LIC 20..424 CDD:273305 135/509 (27%)
Neur_chan_LBD 27..253 CDD:280998 60/248 (24%)
Neur_chan_memb 260..>355 CDD:280999 45/96 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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