DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SecCl and Glrb

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_036018791.1 Gene:Glrb / 14658 MGIID:95751 Length:530 Species:Mus musculus


Alignment Length:550 Identity:141/550 - (25%)
Similarity:242/550 - (44%) Gaps:126/550 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 VGVKAEEEEC----PSMADAGSLQQTQLIQRLTHVCRYDRLERPFEYDSDGKRLPIVVKTRIYVY 84
            :|::|....|    ..:|.......:.::.||  :..||...||     :.|.:|:.|...|::.
Mouse    42 LGLQACHHSCQQSPEDLARVPPNSTSNILNRL--LVSYDPRIRP-----NFKGIPVDVVVNIFIN 99

  Fly    85 FLQNLNSDLLQFKMHALLQLRFQDKRLAYKA-FNRSDNILGQKHLSERLWLPHIFFANERESSIL 148
            ...::....:.::::..|:.::.|.||...: |..||.:.....:.:.||.|.:|||||:.::..
Mouse   100 SFGSIQETTMDYRVNIFLRQKWNDPRLKLPSDFRGSDALTVDPTMYKCLWKPDLFFANEKSANFH 164

  Fly   149 GTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMYNTSDLILEWEPHT 213
            ...::::|..:..:|:|::|.|:..:|.|.::...||.|.|.|...|||:.|.|.||...|:...
Mouse   165 DVTQENILLFIFRDGDVLVSMRLSITLSCPLDLTLFPMDTQRCKMQLESFGYTTDDLRFIWQSGD 229

  Fly   214 PI--------SFDPEMRLTEY-NMAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSFTVNLKREIGF 269
            |:        .||.:....|| |..:::..|                |.|:.:.....|:|::||
Mouse   230 PVQLEKIALPQFDIKKEDIEYGNCTKYYKGT----------------GYYTCVEVIFTLRRQVGF 278

  Fly   270 YLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKVSYIKVSEVWF 334
            |::..|.|:::||.:||:|||:..|||..|:.||..::||..:..::.:..||||||:|..:||.
Mouse   279 YMMGVYAPTLLIVVLSWLSFWINPDASAARVPLGIFSVLSLASECTTLAAELPKVSYVKALDVWL 343

  Fly   335 LGCTFFIFGSLVEFAFVNTIWRRKENIELKKVNSKYIIKSTLTPRPARRQIGGSLSNESRARSCS 399
            :.|..|.|.||||:|.|..:....:.:|.:|..   |.|:        .|..|...|.::     
Mouse   344 IACLLFGFASLVEYAVVQVMLNNPKRVEAEKAR---IAKA--------EQADGKGGNAAK----- 392

  Fly   400 SLDNIVSSTESVRNGNGTVNQGFNNYLTVH----PNLPII----------------RTECAEADT 444
                     ::..||.||         .||    ..||::                .|:..|...
Mouse   393 ---------KNTVNGTGT---------PVHISTLQELPMVCQQITYQLDGWPTDTLTTQVGETRC 439

  Fly   445 VSICSA----RTNNDHIV-------------------DVD--------KDKKDTPPTFTTMTPQE 478
            ..:|::    |:|:..||                   :|:        |:||  ||....:.| .
Mouse   440 KKVCTSKSDLRSNDFSIVGSLPRDFELSNYDCYGKPIEVNNGLGKPQAKNKK--PPPAKPVIP-T 501

  Fly   479 IAMWIDRRSRFLFPAMFLAFNALYWTFVYV 508
            .|..||..:|.|||..||.||.:||: :|:
Mouse   502 AAKRIDLYARALFPFCFLFFNVIYWS-IYL 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 136/522 (26%)
Neur_chan_LBD 44..267 CDD:280998 56/232 (24%)
Neur_chan_memb 275..503 CDD:280999 75/278 (27%)
GlrbXP_036018791.1 LIC 64..529 CDD:273305 136/525 (26%)
LGIC_ECD_GlyR_beta 89..275 CDD:349811 48/201 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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