DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SecCl and Gabrr1

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_032101.3 Gene:Gabrr1 / 14408 MGIID:95625 Length:480 Species:Mus musculus


Alignment Length:486 Identity:127/486 - (26%)
Similarity:234/486 - (48%) Gaps:71/486 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 AEEEECPSMADAGSLQQTQLI--QRLTHVCRYDRLERPFEYDSDGKRLPIVVKTRIYVYFLQNLN 90
            |.::..|.:..:..:.::.|.  ::|..:..:|...||   ...|..:|:.|.  :.|..|.:::
Mouse    54 AHKQGSPILRRSSDITKSPLTKSEQLLRIDDHDFSMRP---GFGGPAIPVGVD--VQVESLDSIS 113

  Fly    91 SDLLQFKMHALLQLRFQDKRLAYKAFNRSDNILGQKHLSERLWLPHIFFANERESSILGTDEKDV 155
            ...:.|.|...|:..::|:||::.:.|.. ::.....|.:::|:|.:||.:.:.|.|..|...:|
Mouse   114 EVDMDFTMTLYLRHYWKDERLSFPSSNNL-SMTFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNV 177

  Fly   156 LTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMYNTSDLILEWEP-HTPISFDP 219
            :..:.|:|.|:.|.|:..:..|.|:|.:||.|.|.||..:||:.|...||:|.|:. :..:..|.
Mouse   178 MLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKGNDSLKTDE 242

  Fly   220 EMRLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAI 284
            .:.|:::.:.:| |.||       .|...:..|.|:.|.....|:|.|.|:||..|.|:.::|.:
Mouse   243 RISLSQFLIQEF-HTTT-------KLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVML 299

  Fly   285 SWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFA 349
            ||||||:...|.|.|:.||.:|:|:..|:.:..:.::|:|||||..:::......|:|.|::|:|
Mouse   300 SWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYA 364

  Fly   350 FVN---TIWRRKENIELKKVNSKYIIKSTLTPRPARRQIGGSLSNESRARSCSSLDNIVSSTESV 411
            .||   |:..|||    :|:..|......| |:|....:..|.|                     
Mouse   365 AVNYLTTVQERKE----RKLREKISCTCGL-PQPRGVMLDSSYS--------------------- 403

  Fly   412 RNGNGTVNQGFNNYLTVH---PNLPIIRTECAEADTVSICSARTNNDHIVDVDKDKKDTPPTFTT 473
               :|.||. ...|:..:   |:..:::        :::.|.|.:        ..:|....::.:
Mouse   404 ---DGEVND-LGGYMPENGEKPDRMMVQ--------LTLASERGS--------PQRKGQRGSYVS 448

  Fly   474 MTPQEIAMWIDRRSRFLFPAMFLAFNALYWT 504
            |.....|  ||:.||.:|||.::.||.:||:
Mouse   449 MRINTHA--IDKYSRIIFPAAYILFNLIYWS 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 125/471 (27%)
Neur_chan_LBD 44..267 CDD:280998 59/225 (26%)
Neur_chan_memb 275..503 CDD:280999 60/233 (26%)
Gabrr1NP_032101.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 29..67 2/12 (17%)
LIC 76..479 CDD:273305 124/464 (27%)
Neur_chan_LBD 77..282 CDD:280998 58/218 (27%)
Neur_chan_memb 289..476 CDD:280999 60/234 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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