DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SecCl and Gabre

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_059065.2 Gene:Gabre / 14404 MGIID:1330235 Length:916 Species:Mus musculus


Alignment Length:517 Identity:122/517 - (23%)
Similarity:215/517 - (41%) Gaps:108/517 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 AEEEE----CPSMADAGSLQQTQLIQRLTHVCRYDRLERPFEYDSDGKRLPIVVKTRIYVYFLQN 88
            |:|.|    |.:....|.|.:...|.. |.:..||...||    ..|:: |.||...:.|..|..
Mouse   461 AKEPELTVDCMTERPGGKLTRASRILN-TILSNYDHKLRP----GIGEK-PTVVTVEVIVNSLGP 519

  Fly    89 LNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDNILGQKHLSERLWLPHIFFANERESSILGTDEK 153
            :::..:::.:..:....:.|:||.|.  :..:.::...::..:||:|..||.|.:.     |.|.
Mouse   520 ISTPDMEYSIDIIFHQTWYDERLRYN--DTFETLILHGNVVSQLWIPDTFFRNSKR-----TQEY 577

  Fly   154 DV-----LTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMYNTSDLILEWEPHT 213
            |:     :..:..:|.|:.|.||.....|.::...||.|...|.....|:.|:.|::|.:||   
Mouse   578 DITIPNQMALIHKDGKVLYSVRMTIDARCSLHMLNFPMDSHSCPLSFSSFSYDDSEMIYKWE--- 639

  Fly   214 PISFDPEM------RLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSFTVNLKREIGFYLL 272
              :|..|:      :|.|::.....:.|.|:.:.         .|::..::|..|:.|..||.:.
Mouse   640 --NFKLEINAKNTWKLLEFDFTGVNNKTEIISTP---------FGDFMVMTFFFNVSRRFGFIVF 693

  Fly   273 DYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGC 337
            ..|:||.:...:||||||::.:|:..|..:|.|::|:..||.:...||.|:|||:...:.:...|
Mouse   694 QNYVPSSVTTMLSWVSFWIKIEAAAARASVGVSSVLTMATLGTLSCKNFPRVSYLTALDFYIAIC 758

  Fly   338 TFFIFGSLVEFAFVNTIW----RRKENIELKKV--NSKYIIKSTLTPRPARRQIGGSLSNESRAR 396
            ....|.:|:|||.:|.:.    :|:.::::.::  ||:...::....|...|         :|||
Mouse   759 FVLCFCTLLEFAVLNFLTYNNIKRQASLKVYQLPTNSRANARTRARARTRAR---------ARAR 814

  Fly   397 SCSSLD----NIVSSTESVRNGNGTVNQGFNNY----LTVHPNLPIIRTECAEADTVSICSARTN 453
            :....:    .||:..|:...|          |    .:..|..|..|  |..:   .:|.....
Mouse   815 ARQQQEVFVCEIVTYEENAEEG----------YQWSPRSRRPQCPWRR--CGRS---YVCFRVLR 864

  Fly   454 NDHIVDVDKDKKDTPPTFTTMTPQ-EIAMW-----------IDRRSRFLFPAMFLAFNALYW 503
            .                :..|.|. |...|           :|..||.|||..|..||.|||
Mouse   865 K----------------YFCMAPGCEGGSWQRGRICIHVYRLDNYSRVLFPITFFFFNVLYW 910

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 116/498 (23%)
Neur_chan_LBD 44..267 CDD:280998 51/233 (22%)
Neur_chan_memb 275..503 CDD:280999 61/253 (24%)
GabreNP_059065.2 Neur_chan_LBD 482..687 CDD:280998 50/231 (22%)
LIC 484..912 CDD:273305 116/494 (23%)
Neur_chan_memb 696..910 CDD:280999 61/253 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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