DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and Gabrd

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_006538609.2 Gene:Gabrd / 14403 MGIID:95622 Length:483 Species:Mus musculus


Alignment Length:452 Identity:115/452 - (25%)
Similarity:200/452 - (44%) Gaps:92/452 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 PIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDNILG-QKHLSERLWLPHI 137
            |:.|...:.|..:.:::...:::.|...|...::|.||:|   |.::..|| .....::||||..
Mouse    97 PVNVALALEVASIDHISEANMEYTMTVFLHQSWRDSRLSY---NHTNETLGLDSRFVDKLWLPDT 158

  Fly   138 FFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMYNT 202
            |..|.:.:.......::.|..|.|:|.::.|.|:.:::.|.|:..|:|.|:|.|...|||:.|::
Mouse   159 FIVNAKSAWFHDVTVENKLIRLQPDGVILYSIRITSTVACDMDLAKYPLDEQECMLDLESYGYSS 223

  Fly   203 SDLILEW-EPHTPISFDPEMRLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSFTVNLKRE 266
            .|::..| |....|.....::|.::.:..:...|.::     |.:.   ||.:..||....|:|.
Mouse   224 EDIVYYWSENQEQIHGLDRLQLAQFTITSYRFTTELM-----NFKS---AGQFPRLSLHFQLRRN 280

  Fly   267 IGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKVSYIKVSE 331
            .|.|::..|:||:::||:||||||:...|.|.|:.||.:|:|:..||..|...:||:.|.||..:
Mouse   281 RGVYIIQSYMPSVLLVAMSWVSFWISQAAVPARVSLGITTVLTMTTLMVSARSSLPRASAIKALD 345

  Fly   332 VWFLGCTFFIFGSLVEFAFV--NTIWRRKENIELKKVNSK-------YIIKSTLTPRPARRQIGG 387
            |:|..|..|:|.:|||:||.  |..:|:|...::|....:       .|:..:|:.....:::..
Mouse   346 VYFWICYVFVFAALVEYAFAHFNADYRKKRKAKVKVTKPRAEMDVRNAIVLFSLSAAGVSQELAI 410

  Fly   388 SLSNESRARSCSSLDNIVSSTESVR-----------NGNGTVNQGFNNYLTVHPNLPIIRTECAE 441
            | ..:.|...     |::.|..||.           .|.|.:..               |.:..:
Mouse   411 S-RRQGRVPG-----NLMGSYRSVEVEAKKEGGSRPGGPGGIRS---------------RLKPID 454

  Fly   442 ADTVSICSARTNNDHIVDVDKDKKDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYW 503
            |||                                      ||..:|.:|||.|.|.|.:||
Mouse   455 ADT--------------------------------------IDIYARAVFPAAFAAVNIIYW 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 115/452 (25%)
Neur_chan_LBD 44..267 CDD:280998 48/194 (25%)
Neur_chan_memb 275..503 CDD:280999 63/247 (26%)
GabrdXP_006538609.2 LGIC_ECD 97..280 CDD:355788 47/193 (24%)
Cys-loop 198..212 CDD:349787 6/13 (46%)
LGIC_TM_GABAAR_delta 283..>371 CDD:349857 38/87 (44%)
TM1 helix 286..306 CDD:349857 11/19 (58%)
TM2 helix 315..336 CDD:349857 7/20 (35%)
TM3 helix 346..368 CDD:349857 10/21 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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