DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and Gabra4

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_542154.3 Gene:Gabra4 / 140675 RGDID:621670 Length:552 Species:Rattus norvegicus


Alignment Length:560 Identity:142/560 - (25%)
Similarity:242/560 - (43%) Gaps:100/560 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 ITLILVLSIWT----SVGVKAEEEE-CPSMADAGSLQQTQLIQRLTHVCRYDRLERPFEYDSDGK 71
            :.|:.||.:.|    |.|..:::|: ||.       ..|:::..|  :..||...||      |.
  Rat    18 LALLHVLCLATCLNESPGQNSKDEKLCPE-------NFTRILDSL--LDGYDNRLRP------GF 67

  Fly    72 RLPIV-VKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKA---FNRSDNILGQKHLSERL 132
            ..|:. |||.|||.....::...:::.|....:..:.||||.|..   ..|.:|::..|     :
  Rat    68 GGPVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKYDGPIEILRLNNMMVTK-----V 127

  Fly   133 WLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLES 197
            |.|..||.|.::|........:.|..:...|.::.:.|:..|..|.|....||.|...|.....|
  Rat   128 WTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGS 192

  Fly   198 WMYNTSDLILEWE--PHTPISFDPE-MRLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSF 259
            :.|..|::|..|.  |...:....| ..|.:|::.....::..::|         ..|.|..::.
  Rat   193 YAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTVSSETIKS---------ITGEYIVMTV 248

  Fly   260 TVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKV 324
            ..:|:|::|::::..|:|.:|.|.:|.||||:..::.|.|.:.|.:|:|:..|||.|...:||||
  Rat   249 YFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKV 313

  Fly   325 SYIKVSEVWFLG-CTFFIFGSLVEFAFVN-----TIWRRKENIE-----------LKKVNSKYII 372
            ||....: ||:. |..|:|.:|:|||.||     .:.:.|:.|.           ||:.:::..:
  Rat   314 SYATAMD-WFIAVCFAFVFSALIEFAAVNYFTNIQMQKAKKKISKPPPEVPAAPVLKEKHTETSL 377

  Fly   373 KSTLTPRPARRQIGGSLSNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPIIRT 437
            ::|......|::....:.:||...|.:.:.|..|.|.:.:..:.|..:.   :|...|| |..|.
  Rat   378 QNTHANLNMRKRTNALVHSESDVNSRTEVGNHSSKTTAAQESSETTPKA---HLASSPN-PFSRA 438

  Fly   438 ECAEADTVS-----ICSARTNNDH--IVDVDKDKKDTPPTF------------TTMTPQEIAMW- 482
            ..||  |:|     :.||.:.:.|  :...........|.|            ||..|..::.. 
  Rat   439 NAAE--TISAAARGLSSAASPSPHGTLQPAPLRSASARPAFGARLGRIKTTVNTTGVPGNVSATP 501

  Fly   483 --------------IDRRSRFLFPAMFLAFNALYWTFVYV 508
                          ||:.:|.|||..|.|||.:||. ||:
  Rat   502 PPSAPPPSGSGTSKIDKYARILFPVTFGAFNMVYWV-VYL 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 131/519 (25%)
Neur_chan_LBD 44..267 CDD:280998 53/229 (23%)
Neur_chan_memb 275..503 CDD:280999 75/278 (27%)
Gabra4NP_542154.3 LIC 13..539 CDD:273305 140/557 (25%)
Neur_chan_LBD 49..256 CDD:280998 53/228 (23%)
Neur_chan_memb 263..536 CDD:280999 75/279 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 353..436 16/86 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 448..470 3/21 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 486..513 3/26 (12%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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