DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and CHRNG

DIOPT Version :10

Sequence 1:NP_648984.2 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_005190.4 Gene:CHRNG / 1146 HGNCID:1967 Length:517 Species:Homo sapiens


Alignment Length:220 Identity:50/220 - (22%)
Similarity:76/220 - (34%) Gaps:55/220 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 SIAEMRISKRYDTIPSGTLYPNA----DEIAYLQRLVRFKDSAIIVLNKPPKLPVKGNVPIHNSM 100
            |:||...|.| |::.|.:...|.    |:....||..:.|..|..|.||.........:.:..:|
Human   479 SLAESLDSDR-DSVCSNSNSNNGKNGKDKEKEKQRKDKDKTRADSVANKLGSFSKTLGIKLKKNM 542

  Fly   101 DALAAAALSFGNDEGPRLVH-RLDRETSGLLVMGRTKESIDYLHSVFSDYKGRNSSCKAWNKACE 164
            ..|..            ||| ::.|..|   ..|:..:|.:           ||...|  :|:.:
Human   543 GGLGG------------LVHGKMGRANS---ANGKNGDSAE-----------RNKEKK--SKSRK 579

  Fly   165 AMYQQYWALVIGSPKEKEGLISAPLSKVL----LDDGKTDRVVLAQGSGFEASQDAITEYKVLGP 225
            ...::..|....||.||  ...:|..|..    .|.|...|     |..::.|.|......:|..
Human   580 GSKEESGASASTSPSEK--TTPSPTDKASGASPADKGSGSR-----GDAWKYSTDVKLSLNILRA 637

  Fly   226 KINGCSWVELRPI------TSRKHQ 244
            .:.|    |.:.|      ||.:||
Human   638 AMQG----ERKFIFAGLLLTSHRHQ 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_648984.2 LIC 43..505 CDD:455710 48/217 (22%)
CHRNGNP_005190.4 LGIC_ECD_nAChR_G 49..241 CDD:349830
Cys-loop 150..164 CDD:349830
Neur_chan_memb 248..492 CDD:460753 6/13 (46%)
Blue background indicates that the domain is not in the aligned region.

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