DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SecCl and glra1

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_002940962.2 Gene:glra1 / 100498379 XenbaseID:XB-GENE-6035798 Length:450 Species:Xenopus tropicalis


Alignment Length:517 Identity:142/517 - (27%)
Similarity:233/517 - (45%) Gaps:95/517 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MMNLHLSEIFWITLILVLSIWTS--VGVKAEEEECPSMADAGSLQQTQLIQRLT-HVCRYDRLER 62
            |.:|:...|:....:|..|:..|  ||..|.       :.|..:..:..:.:|. .:..||...|
 Frog     1 MCSLNALGIYLWETVLFFSLAASKEVGASAR-------SSAKLMSPSDFLDKLMGKISGYDARIR 58

  Fly    63 PFEYDSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDNILGQKH 127
            |     :.|..|:.|...|::....::....:.::::..|:.::.|.||||..: ..|::.....
 Frog    59 P-----NFKGPPVNVSCNIFINSFGSIAETTMDYRLNIFLRQQWNDPRLAYSEY-PDDSLDLDPS 117

  Fly   128 LSERLWLPHIFFANERESSI--LGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQF 190
            :.:.:|.|.:|||||:.::.  :.||.|  |..:...|||:.|.|:..:|.|.|:.:.||.|.|.
 Frog   118 MLDSIWKPDLFFANEKGANFHEITTDNK--LLRIFKNGNVLYSIRLTLTLACPMDLKNFPMDVQT 180

  Fly   191 CSTVLESWMYNTSDLILEWEPHTPISFDPEMRLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYS 255
            |...|||:.|..:|||.|||....:.....:.|.::          |::.:.| ||:  ...:||
 Frog   181 CIMQLESFGYTMNDLIFEWEEVGAVQVAEGLTLPQF----------ILKEEKD-LRY--CTKHYS 232

  Fly   256 SLSFT-----VNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSS 315
            :..||     .:|:|::|:||:..|:||::||.:||||||:..||:|.|:.||.:|:|:..|.||
 Frog   233 TGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSS 297

  Fly   316 SQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTIWRR-KENIELKKVNSKYIIKSTLTPR 379
            ....:||||||:|..::|...|..|:|.:|:|:|.||.:.|: ||.:..::              
 Frog   298 GSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRR-------------- 348

  Fly   380 PARRQIGGSLSNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPIIRTECAEA-D 443
                          |.|.....:|..........|.|..                    |.:| |
 Frog   349 --------------RRRHHKEDENAEGRFSFAAYGMGPA--------------------CLQAKD 379

  Fly   444 TVSICSARTNN--DHIVDVDKDKKDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYW 503
            .:|:.....||  .....|.|...:....|.:.     |..||:.||..||.:||.||..||
 Frog   380 GISMKGNNNNNPASSAQPVSKSPDEMRKLFISR-----AKKIDKVSRIGFPLVFLIFNTFYW 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 132/473 (28%)
Neur_chan_LBD 44..267 CDD:280998 61/230 (27%)
Neur_chan_memb 275..503 CDD:280999 66/231 (29%)
glra1XP_002940962.2 LIC 10..439 CDD:273305 139/508 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.