DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and gabra2b

DIOPT Version :10

Sequence 1:NP_648984.2 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_073778567.1 Gene:gabra2b / 100001259 ZFINID:ZDB-GENE-171102-1 Length:451 Species:Danio rerio


Alignment Length:515 Identity:136/515 - (26%)
Similarity:219/515 - (42%) Gaps:102/515 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LHLSEIFWITLILVLSIWTSVGVKAEEEECPSMADA---GSLQQTQLIQRLTHVCRYDRLERPFE 65
            :||. :|.:||     .|.:..|.|:     :..||   .....|:::.||  :..||...||  
Zfish     7 VHLL-VFALTL-----FWHTRSVSAD-----ATTDAFKNNITLFTRILDRL--LDGYDNRLRP-- 56

  Fly    66 YDSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDNILGQKHL-S 129
              ..|.|: ..|||.|||.....::...:::.:....:..::|:||   .|....|||...:| :
Zfish    57 --GLGDRV-TTVKTDIYVTSFGPVSDTDMEYTIDVFFRQSWKDERL---KFEGPMNILRLNNLMA 115

  Fly   130 ERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTV 194
            .::|.|..||.|.::|........:.|..:..:|.::.:.|:.....|.|:.:.||.|...|...
Zfish   116 SKIWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVHAECPMHLEDFPMDFHSCPLK 180

  Fly   195 LESWMYNTSDLILEWEPHTPISF---DPEMRLTEYN-MAQFWHNTTIVQSDGDNLRHGAFAGNYS 255
            ..|:.|.|:::...|..:...|.   :...||.:|: :.|...|.||..|.|:          |:
Zfish   181 FGSYAYTTTEVTYTWTKNASNSVVVEEESSRLNQYDLLGQTVGNETIRSSTGE----------YT 235

  Fly   256 SLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKN 320
            .::...:|||:||::::..|||.:|.|.:|.|||||..::.|.|.:.|.:|:|:..|||.|...:
Zfish   236 VMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNS 300

  Fly   321 LPKVSYIKVSEVWFLG-CTFFIFGSLVEFAFVNTI------WRRKENIELKKVNSKYIIKSTLTP 378
            ||||:|....: ||:. |..|:|.:|:|||.||..      |..|..:..||.....:||.    
Zfish   301 LPKVAYATAMD-WFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDKKKEKASVIKK---- 360

  Fly   379 RPARRQIGGSLSNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPIIRTECAEAD 443
                                                |........||.   ||:        ..|
Zfish   361 ------------------------------------NNAYAVAVANYA---PNI--------TKD 378

  Fly   444 TVSICSARTNNDHIVDVDKDKKDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYW 503
            ||....|:.:   :.:..|.|.|..|.....|...::. |||.||.:||.:|.:||.:||
Zfish   379 TVLPTIAKGS---VAEQGKTKVDGKPAEAKKTFNSVSK-IDRMSRIMFPVLFGSFNLVYW 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_648984.2 LIC 43..505 CDD:455710 126/473 (27%)
gabra2bXP_073778567.1 None

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