DRSC/TRiP Functional Genomics Resources

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Protein Alignment frc and vrg4

DIOPT Version :9

Sequence 1:NP_001137962.1 Gene:frc / 39943 FlyBaseID:FBgn0042641 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_594679.1 Gene:vrg4 / 2542850 PomBaseID:SPAC144.18 Length:345 Species:Schizosaccharomyces pombe


Alignment Length:320 Identity:76/320 - (23%)
Similarity:152/320 - (47%) Gaps:33/320 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 YGLSSFMITVVNKTVLTS--YHFPSFLFLSLGQLTASIVVLGMGKRLKLVNFPPLQRNTFAKIFP 132
            |.::|.::|:.||.||:|  |:. :||.|:: |.|..:..:|:.||||::|:...........||
pombe    20 YCMASILMTLTNKYVLSSPGYNM-NFLLLTV-QSTVCVAAIGILKRLKVINYRDFDFREAKFWFP 82

  Fly   133 LPLIFLGNMMFGLGGTKTLSLPMFAALRRFSILMTMLLELKILGLRPSNAVQVSVYAMIGGALLA 197
            :..:.:..:.......:.||:|::...:..:|::....|:...|...:.....|...|:..:::|
pombe    83 ISFLLVAMIYTASKALQFLSVPVYTIFKNLTIIIIAYGEVLWFGGHVTALTLFSFGLMVLSSIVA 147

  Fly   198 ASDDL---SFNMR----GYIYVMITNALTASNGVYV---KKKLDTSEIGKYGLMYYNSLFMFLPA 252
            |..|:   ||..:    ||:: |:.|.||  |..:|   :|::..:....:..|:||:| :.:|.
pombe   148 AWADIQSSSFASQTLNSGYLW-MVLNCLT--NAAFVLAMRKRIKLTNFRDFDTMFYNNL-LSIPV 208

  Fly   253 LAL------NYVTGNLDQALNFEQWNDSVF--VVQFLLSCVMGFILSYSTILCTQFNSALTTTIV 309
            |.:      ::...|:.|  ||..  |:.|  ::...:|.|....:||::..|.:..|:.|.::|
pombe   209 LVICTLFTEDWSAENIAQ--NFPP--DAKFGVLMAMAISGVSSVGISYTSAWCVRVTSSTTYSMV 269

  Fly   310 GCLKNICVTYLGM-FIGGDYVFSWLNCIGINISVLASLLYTYVTFRRKRAPDKQDHLPST 368
            |.|..:.:...|: |......|.  :...|.:..::.::|.....:::|..|....||.|
pombe   270 GALNKLPLAIAGLVFFDAPITFG--SVTAILLGFISGVVYAVAKSQQQRQKDPATILPMT 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
frcNP_001137962.1 TPT 67..348 CDD:281186 70/298 (23%)
vrg4NP_594679.1 VRG4 7..321 CDD:227402 73/312 (23%)
EamA 101..307 CDD:304911 48/215 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 67 1.000 Domainoid score I2785
eggNOG 1 0.900 - - E1_COG5070
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 73 1.000 Inparanoid score I1905
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto101245
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R503
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.890

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