DRSC/TRiP Functional Genomics Resources

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Protein Alignment blot and slc6a4a

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_001035061.1 Gene:slc6a4a / 664719 ZFINID:ZDB-GENE-060314-1 Length:646 Species:Danio rerio


Alignment Length:663 Identity:145/663 - (21%)
Similarity:242/663 - (36%) Gaps:175/663 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 PQTTRSCISTVSSVVD----SGGGRTTATSGRISSS------GIVTLSDSNNTLSEIQGGYHDMD 177
            |::..:....|.||.:    ||.|....::|..|:|      |..|.:|..||    .|.:..: 
Zfish    21 PESQENGRLVVDSVPEKDQKSGSGPGQVSNGYRSTSPQSPKEGAGTGTDRVNT----PGTFRTL- 80

  Fly   178 HDAVSKNFSISASAHNITTASNAKLLPAVEDESNKQTKCSVFRGLVLCLCLNLSYANVVRFPREL 242
                              ......|.|..|..|.|..    |...|:...::|  .||.|||   
Zfish    81 ------------------VVQQTSLDPPRETWSKKMD----FLLSVIGYAVDL--GNVWRFP--- 118

  Fly   243 DRY------GSAYLVPYVVLLFLVGLPMVLLEISVGQFLGQGAAHTWR-ASPIFKGACMISRFAS 300
              |      |.|:|:||:::....|:|:..:|:::|||...|....|: ..|||||.    .||.
Zfish   119 --YICYQNGGGAFLLPYLLMAVFGGVPLFYMELALGQFHRSGCISIWKHVCPIFKGI----GFAI 177

  Fly   301 WLSAIWVSL--QAVLALAYIGMFAS--NDLPFREC-------------------------AGP-- 334
            .:.|::::.  ..::|.|...:.:|  ..||:..|                         ..|  
Zfish   178 CIIALYIAFYYNTIMAWALYYLLSSFRATLPWTTCNNRWNTPNCTHYLSTDLNVSWTNNSISPAE 242

  Fly   335 ---VKLRLSGYLLTG------TSGQECLQLTFLTPFWRNPLYFGLLAAGLIGLWIVVMLCTHNAK 390
               |:..|..:|..|      .|.|..|.|.|:.......::.|:..:|.: :|:.         
Zfish   243 EFYVRQVLQVHLSPGLHQLGWVSWQLALCLLFIFTVVYFSIWKGVKTSGKV-VWVT--------- 297

  Fly   391 ILRRSIFVFGLVGLVLL---CTLTG-WEVRNSFSR---HYFPELWGFDSNLLAESNIWFNALMQV 448
                :.|.: ||.|:||   .||.| |       |   .|....|    ..|..:.:|.:|..|:
Zfish   298 ----ATFPY-LVLLILLIRGATLPGAW-------RGVVFYLKPDW----KKLLTTTVWLDAAAQI 346

  Fly   449 LFSVNCGFGALPMITG-----KFLYKGDAVRTSVVYLCFNLLINAIAVTLFMVQFDLSSNGFQNM 508
            .||:..|||.|.....     ...|| ||:.||.|....:.|...:..|:.....::...|.:.:
Zfish   347 FFSLGPGFGVLLAFASYNPFHNNCYK-DALITSSVNCLTSFLSGFVIFTVLGYMAEMRQQGVETV 410

  Fly   509 -EELKP--LTAIY-DRVLNGSREGDSHLLQHLVPSLIYALIILSAMV--------------SITV 555
             ::..|  |..|| :.:.|             :|:..:..||...|:              .||.
Zfish   411 AKDAGPSLLFIIYAEAIAN-------------MPAATFFAIIFFLMIIMLGLDSTFAGLEGVITA 462

  Fly   556 AVYTSTRLVPRRPNY------VICLIGLVVAVISFAAPKFLIARVLDSRLVGTMVVTALVFELIA 614
            .:.....|:.||..:      .:|.:| .::.:::...  .:.::.:....|..|:|.:..|:||
Zfish   463 MLDEFPHLLARRREWFVLGLVCVCYLG-ALSTLTYGGA--FVVKLFEEYATGPAVITVVFLEVIA 524

  Fly   615 ITWIYGAKNIYTDLEFSIGRPIFRVWMWLWV-ICPAILTGILVWWCADDDQYDLLAEYLPRWAPI 678
            ::|.||......|::..:|......|...|: |||..|..|:|.:.|...:..|.....|.|..:
Zfish   525 VSWFYGTTRFCNDVQLMLGFAPGLFWRVCWIAICPCFLLFIIVSFLAFPPEVKLFDYLYPFWTTV 589

  Fly   679 LFVLAVIVIIACV 691
            |.....:....||
Zfish   590 LGYCIGVSSFICV 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 117/523 (22%)
slc6a4aNP_001035061.1 SLC5-6-like_sbd 91..628 CDD:294310 127/570 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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