DRSC/TRiP Functional Genomics Resources

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Protein Alignment blot and SLC6A1

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_001335179.1 Gene:SLC6A1 / 6529 HGNCID:11042 Length:599 Species:Homo sapiens


Alignment Length:600 Identity:134/600 - (22%)
Similarity:242/600 - (40%) Gaps:115/600 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 KLLPAVEDESNKQTKCSVFRGLVLCLCLNLSYANVVRFPRELDRY-GSAYLVPYVVLLFLVGLPM 264
            |:.....|..::.|....|..|:.|:...:...||.|||....:. |.|:|:||.:.|...|:|:
Human    33 KVQKKAADLPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPL 97

  Fly   265 VLLEISVGQFLGQGAAHTWRASPIFKGACMISRFAS-WLSAIWVSLQAVLALAYIGMFASNDLPF 328
            .|||.|:||:...|....|:.:|:|||..:.:...| ||:..::.:.: .|:.|:....:..||:
Human    98 FLLECSLGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYYIVIIS-WAIYYLYNSFTTTLPW 161

  Fly   329 RECAGP--VKLRLSGYLLTGTSGQECLQLTFLTPFWRNPLY---FGL---------LAAGLIGLW 379
            ::|..|  .....|.|.:..|:.    ..:.:..||...::   .||         ||..|...|
Human   162 KQCDNPWNTDRCFSNYSMVNTTN----MTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAW 222

  Fly   380 IVVMLCT-----HNAKILRRSIFVFGLVGLVLL----CTLTGWEVRNSFSRHYFPELWGFDSNLL 435
            |:|..|.     ...|::..|. .:..:.|::|    .||.|  .:.....:..|..     ..|
Human   223 ILVYFCIWKGVGWTGKVVYFSA-TYPYIMLIILFFRGVTLPG--AKEGILFYITPNF-----RKL 279

  Fly   436 AESNIWFNALMQVLFSVNCGFGALPMITGKFLYKGDAVRTSVVYLCFNLLINAIA--VTLFMVQF 498
            ::|.:|.:|..|:.||...|.|:|..:.....:..:..|.|::..|.|...:..|  |...:|.|
Human   280 SDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGF 344

  Fly   499 ----------DLSSNG----FQNMEE------LKPLTAIYDRVLNGSREGDSHLLQHLVPSLIYA 543
                      |::::|    |....|      :.||.||                      |.::
Human   345 MAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAI----------------------LFFS 387

  Fly   544 LIILSAMVS--------ITVAVYTSTRLV-PRRPNYV--ICLIGLVVAVISFAAPKFLIARVLDS 597
            ::::..:.|        ||..|....||: .||..::  :|:|..::.:.:.......:.::.|.
Human   388 MLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDY 452

  Fly   598 RLVGTMVVTALV-FELIAITWIYGAKNIYTDLEFSIG-RPIFRVWMWLWVIC-----PAILTGIL 655
            .....|.:..|| ||.::|:|.||....|.:::..:| ||.  :|   |.:|     |.|:.|:.
Human   453 YSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPC--IW---WKLCWSFFTPIIVAGVF 512

  Fly   656 VWWCADDDQYDLLAEYLPRWAP---ILFVLAVIVIIA--CVQIFRQVEYNFFGMICEASKPAK-- 713
            ::.........:.....|:|..   .|..|:.:|:|.  ...:|..::.:....|....:|::  
Human   513 IFSAVQMTPLTMGNYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLKGSLKQRIQVMVQPSEDI 577

  Fly   714 ---EWGPADPLARHS 725
               |.||..|.|..|
Human   578 VRPENGPEQPQAGSS 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 116/504 (23%)
SLC6A1NP_001335179.1 SLC6sbd_GAT1 2..599 CDD:212075 133/599 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 577..599 5/15 (33%)
PDZ-binding 597..599
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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