DRSC/TRiP Functional Genomics Resources

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Protein Alignment blot and SLC6A20

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_001372612.1 Gene:SLC6A20 / 54716 HGNCID:30927 Length:603 Species:Homo sapiens


Alignment Length:618 Identity:137/618 - (22%)
Similarity:237/618 - (38%) Gaps:152/618 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 CLCLNLSYANVVRFPRELDRY-GSAYLVPYVVLLFLVGLPMVLLEISVGQFLGQGAAHTWRA-SP 287
            |:...:...||.|||.....| |.::||||:::|.:.|:|::.||::|||.:.||:...||. ||
Human    18 CISYAVGLGNVWRFPYLCQMYGGGSFLVPYIIMLIVEGMPLLYLELAVGQRMRQGSIGAWRTISP 82

  Fly   288 IFKGACMISRFASWLSAIWVSLQAVLALAYIGMFASNDLPFRECAGPVKLRLSGYLLTGTSGQEC 352
            ...|..:.|...|:..:::.::....|..|:.....:.||:..|  |:....:||      .:||
Human    83 YLSGVGVASVVVSFFLSMYYNVINAWAFWYLFHSFQDPLPWSVC--PLNGNHTGY------DEEC 139

  Fly   353 LQLTFLTPFWR------------------NPLYFGLLAAGLIGLWIVVMLCTHNAKILRRS---- 395
            .:.:....||.                  .|....|||      |:||.||     |||.:    
Human   140 EKASSTQYFWYRKTLNISPSLQENGGVQWEPALCLLLA------WLVVYLC-----ILRGTESTG 193

  Fly   396 ---IFVFGLVGLVLL------CTLTGWEVRNSFSRHYFPE------LWGFDSNLLAESNIWFNAL 445
               .|...|...||:      .||.|  ..|.....:.|:      |..|....||....|.||.
Human   194 KVVYFTASLPYCVLIIYLIRGLTLHG--ATNGLMYMFTPKGSSALSLLAFQIEQLANPKAWINAA 256

  Fly   446 MQVLFSVNCGFGALPMITGKFLYKGDAVRTSVVYLCFNLLINAIA-------------------- 490
            .|:.||:..|||:|...........:..:.:::....|...:..|                    
Human   257 TQIFFSLGLGFGSLIAFASYNEPSNNCQKHAIIVSLINSFTSIFASIVTFSIYGFKATFNYENCL 321

  Fly   491 --VTLFMVQ-FDLSSNGF---QNMEELKPLTA---------IYDRVLNGSREGD----------- 529
              |:|.:.. ||| .:||   .|:|::|...|         ::.::.|.|.|.:           
Human   322 KKVSLLLTNTFDL-EDGFLTASNLEQVKGYLASAYPSKYSEMFPQIKNCSLESELDTAVQGTGLA 385

  Fly   530 ----SHLLQHLVPSLIYALII--------LSAMVSITVAVYT--------STRLVPRRPNYVICL 574
                :..::::..|.:::::.        :.:|:..|.|:.|        |:.|.....:.::||
Human   386 FIVYTEAIKNMEVSQLWSVLYFFMLLMLGIGSMLGNTAAILTPLTDSKIISSHLPKEAISGLVCL 450

  Fly   575 IGLVVA-VISFAAPKFLIARVLDSRLVGTMVVTALVFELIAITWIYGAKNIYTDLEFSIGRPIFR 638
            :...:. |.:..|..:......|.....::::..|| |.||:.::||.:...:||:...||.:..
Human   451 VNCAIGMVFTMEAGNYWFDIFNDYAATLSLLLIVLV-ETIAVCYVYGLRRFESDLKAMTGRAVSW 514

  Fly   639 VWMWLWV-ICPA-------------ILTGILVWWCADDDQYDLLAEYLPRWAPILFVLAVIVIIA 689
            .|..:|. :.|.             ||||.|.:...|..|..|:.:..|.:|..:..|.|.....
Human   515 YWKVMWAGVSPLLIVSLFVFYLSDYILTGTLKYQAWDASQGQLVTKDYPAYALAVIGLLVASSTM 579

  Fly   690 CVQIFRQVEYNFFGMICEASKPAKEWGPADPLA 722
            |:.:.....:        ..:..|. |.|||:|
Human   580 CIPLAALGTF--------VQRRLKR-GDADPVA 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 123/553 (22%)
SLC6A20NP_001372612.1 SLC6sbd_SIT1 2..588 CDD:271401 131/592 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.910

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