DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment blot and Slc6a12

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_059031.1 Gene:Slc6a12 / 50676 RGDID:620255 Length:628 Species:Rattus norvegicus


Alignment Length:566 Identity:125/566 - (22%)
Similarity:211/566 - (37%) Gaps:167/566 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 LSYANVVRFPRELDRY------GSAYLVPYVVLLFLVGLPMVLLEISVGQFLGQGAAHTWR-ASP 287
            :...||.|||     |      |.|:.:||.:..|..|:|:..||:::||:..||:...|| ..|
  Rat    68 IGLGNVWRFP-----YLCYKNGGGAFFIPYFIFFFSCGIPVFFLEVALGQYSSQGSVTAWRKICP 127

  Fly   288 IFKGACMIS-RFASWLSAIWVSLQAVLALAYIGMFASN--DLPFRECAGPVKLRLSGYLLTGTSG 349
            :.:|..|.| ...|:|:..::   .:||.|...:|:|.  :||:..|.            ...:.
  Rat   128 LLQGIGMASVVIESYLNIYYI---IILAWALFYLFSSFTWELPWTTCT------------NSWNT 177

  Fly   350 QECLQL-------------TFLTP---FWRNPLYFGL-------------LAAGLIGLWIVVMLC 385
            :.|:..             .|.:|   ||...: .|:             ||..|:..||:...|
  Rat   178 EHCVDFLNYSSTRAASYSENFTSPVMEFWERRV-LGITSGIHDLGSLRWELALCLLLAWIICYFC 241

  Fly   386 T-HNAKILRRSIF---VFGLVGLVLLCTLTGWEVRNSFSRHYF---PELWGFDSNLLAESNIWFN 443
            . ...|...:.::   .|..:.|::| .:.|..:..::....|   |:|.     .|.:..:|.:
  Rat   242 IWKGVKSTGKVVYFTATFPYLMLIIL-LIRGVTLPGAYQGIVFYLKPDLL-----RLKDPQVWMD 300

  Fly   444 ALMQVLFSVNCGFGALPMITGKFLYKGDAVRTSVVYLCFNLLINAIAVTLFMVQFDL-SSNGFQN 507
            |..|:.||.....|.|..:.....|..:..|.|:. |||   :|  :.|.|:..|.: |..||..
  Rat   301 AGTQIFFSFAICQGCLTALGSYNKYHNNCYRDSIA-LCF---LN--SATSFVAGFVVFSILGFMA 359

  Fly   508 MEELKPLTAIYDRVLNGSREGDSHL----------LQHLVPSLIYALIIL----SAMVSITVAVY 558
            .|:..|::.:.:     |..|.:.:          |..|...|.:.:::.    |..|.:...|.
  Rat   360 QEQGVPISEVAE-----SGPGLAFIAFPKAVTMMPLSQLWSCLFFLMLLFLGLDSQFVCMECLVT 419

  Fly   559 TSTRLVP-------RRPNYVICLIGLVVAVISFAAPKFLIARVLDSRLVGTMVVTAL-------- 608
            .|..:.|       ||.     |:.|.||::.:.....|:..       |.|.:..|        
  Rat   420 ASMDMFPQQLRKRGRRE-----LLILAVAIVCYLMGLLLVTE-------GGMYIFQLFDYYASSG 472

  Fly   609 -------VFELIAITWIYGAKNIYTDLEFSIGRPIFRVW-----MWLWV---ICPAILTGILVWW 658
                   :||:|.|.|:|||...|.::|..||   :|.|     .||::   :|.|..       
  Rat   473 ICLLFLSLFEVICIGWVYGADRFYDNVEDMIG---YRPWPLVKISWLFLTPGLCLATF------- 527

  Fly   659 CADDDQYDLLAEY----------LPRWAPILFVLAVIVIIACVQIF 694
                  :..|::|          .|.|...:..|.....:|||.:|
  Rat   528 ------FFSLSKYTPLKYNNVYIYPSWGYSIGWLLAFSSMACVPLF 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 116/519 (22%)
Slc6a12NP_059031.1 SLC5-6-like_sbd 49..589 CDD:294310 125/566 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.