DRSC/TRiP Functional Genomics Resources

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Protein Alignment blot and slc6a1b

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_001007363.1 Gene:slc6a1b / 492490 ZFINID:ZDB-GENE-041114-57 Length:600 Species:Danio rerio


Alignment Length:590 Identity:135/590 - (22%)
Similarity:228/590 - (38%) Gaps:120/590 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 ATSGRISSSGIV--------TLSDSNNTLSEIQGGYHDMDHDAVSKNFSISASAHNITTASNAKL 202
            ||:|..:|.|.|        |.:|...||                           :......|.
Zfish     2 ATNGTKASDGHVLTEVNEAPTANDKPKTL---------------------------VVKVQKKKE 39

  Fly   203 LPAVEDESNKQTKCSVFRGLVLCLCLNLSYANVVRFPRELDRY-GSAYLVPYVVLLFLVGLPMVL 266
            ||      :::|....|..|:.|:...:...||.|||....:. |.|:|:||.:.|...|:|:..
Zfish    40 LP------DRETWQGKFDFLLSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFF 98

  Fly   267 LEISVGQFLGQGAAHTWRASPIFKGACMISRFAS-WLSAIWVSLQAVLALAYIGMFASNDLPFRE 330
            ||.::||:...|....|:.:|:|||..:.:...| ||:..::.:.| .|:.|:....:.|||::.
Zfish    99 LETALGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYYIVIIA-WAIYYLYNSFTTDLPWKS 162

  Fly   331 CAGP--VKLRLSGYLLTGTSGQECLQLTFLTPFW-RN--PLYFGLLAAGLIGL---------WIV 381
            |..|  .....|.|.:.....    ..:.:..|| ||  .|..||...|.|.|         |::
Zfish   163 CDNPWNTDKCFSNYSMANIGN----MTSAVVEFWERNMHQLTDGLEKPGEIRLPLAITLAIAWVL 223

  Fly   382 VMLCT-----HNAKILRRS-------IFVFGLVGLVLLCTLTGWEVRNSFSRHYFPELWGFDSNL 434
            |..|.     ...|::..|       :|:..:.|:    ||.|  .:.....:..||.     :.
Zfish   224 VYFCIWKGVGWTGKVVYFSATYPYFMLFILFIRGV----TLPG--AKEGILFYVTPEF-----SK 277

  Fly   435 LAESNIWFNALMQVLFSVNCGFGALPMITGKFLYKGDAVRTSVVYLCFNLLINAIAVTLFMVQFD 499
            |.||.:|.:|..|:.||...|.|:|..:.....:..:..:.|::..|.|...:..|.  |::   
Zfish   278 LKESEVWLDAATQIFFSYGLGLGSLIALGSYNPFNNNVYKDSIIVCCINSFTSMFAG--FVI--- 337

  Fly   500 LSSNGFQNMEELKPLTAIYDRVLNGSREGDSHL-----LQHLVPSLIYALIILSAMVSI------ 553
            .|..||......:|:..:     ..|..|.:.|     :..|..|.::|::..|.::.:      
Zfish   338 FSIVGFMAHITKRPIADV-----AASGPGLAFLAYPEAVTQLPISPLWAVLFFSMLLMLGIDSQF 397

  Fly   554 -TVAVYTSTRLVPRRPN----------YVICLIGLVVAVISFAAPKFLIARVLDSRLVGTMVVTA 607
             ||..:. |.||...|.          .|:||:..::.:.:.......:.::.|......|.:..
Zfish   398 CTVEGFI-TALVDEFPRALRGRREIFIAVVCLVSYLIGLSNITQGGLYVFKLFDYYSASGMCLLF 461

  Fly   608 LV-FELIAITWIYGAKNIYTDLEFSIGRPIFRVWMWLWVI-CPAILTGILVWWCADDDQYDLLAE 670
            || ||.::|:|.||....|.:||..||......|...||: .|.|:.|:.::.........|...
Zfish   462 LVFFECVSISWFYGVNKFYGNLEEMIGYKPCIWWKLCWVVFTPLIVAGVFLFSAVQMVPLTLNNY 526

  Fly   671 YLPRW 675
            ..|:|
Zfish   527 VFPKW 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 118/491 (24%)
slc6a1bNP_001007363.1 SLC5-6-like_sbd 2..600 CDD:294310 135/590 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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