DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment blot and Gat

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster


Alignment Length:611 Identity:138/611 - (22%)
Similarity:245/611 - (40%) Gaps:141/611 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 NTLSEIQGGYHDMDHDAV--SKNF----SISASAHNITTASNAKLLPAVEDESNKQTKCSVFRGL 222
            |:.|:..||.....|:::  ||..    |:.:|:...|..||.:.|..:|...::.:..|....:
  Fly     4 NSASDGDGGGDVCKHESIEMSKELGHTTSLQSSSPTTTDTSNKQQLVKIEQLPDRGSWSSKMDFI 68

  Fly   223 VLCLCLNLSYANVVRFPRELDRY------GSAYLVPYVVLLFLVGLPMVLLEISVGQFLGQGAAH 281
            :..:.|.:...||.|||     |      |.|:::||::.|||.|:||..:|:::||.|..|...
  Fly    69 LSVVGLAIGLGNVWRFP-----YLCYKNGGGAFILPYIITLFLAGIPMFFMELALGQMLTIGGLG 128

  Fly   282 TWRASPIFKGACMISRFASWLSAIWVSLQAVLALA----YIGMFASNDLPFRECAG--------- 333
            .::.:|||||.    .:|:.:.:.|:::..::.||    |..|....|:|:|.|..         
  Fly   129 VFKIAPIFKGI----GYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWWNTVNCVS 189

  Fly   334 ---PVKLRLSGYLLTGTSGQEC---------LQLTF-LTPFWRN---PLYFGL---------LAA 373
               ...|.....::.||:.:.|         |:||. :..||..   .:..|:         ||.
  Fly   190 QYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQISHGIEEIGNIRWELAG 254

  Fly   374 GLIGLWIVVMLCT-HNAKILRRSIFVFGLVGLVLL-------CTLTG------WEVRNSFSRHYF 424
            .|:.:||:...|. ...|...:.::...|...|||       .||.|      :.:..:||:   
  Fly   255 TLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYIIPNFSK--- 316

  Fly   425 PELWGFDSNLLAESNIWFNALMQVLFSVNCGFGALPMITGKFLYKGDAVRTSVVYLCFNLLINAI 489
                      |..|.:|.:|:.|:.||...|.|.|..:.....:..:..:.:::....|     .
  Fly   317 ----------LTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVN-----S 366

  Fly   490 AVTLFMVQFDLSSNGFQNMEELKPLTAIYDRVLNGSREGDSHLLQHLVPS-------------LI 541
            :.::|......|..||...|:.:|:..:     ..|..|.:.|   :.||             |.
  Fly   367 STSMFAGFVIFSVIGFMAHEQQRPVADV-----AASGPGLAFL---VYPSAVLQLPGSPMWSCLF 423

  Fly   542 YALIILSAMVS--------ITVAVYTSTRLVPRRPNY---VICLIGLVVAVISFAAPKFLIARVL 595
            :.:::|..:.|        ||..:....:|:.:|...   ::|.:..:|.:.........|.::|
  Fly   424 FFMLLLIGLDSQFCTMEGFITAIIDEWPQLLRKRKEIFIAIVCALSYLVGLTCITQGGMYIFQIL 488

  Fly   596 DSRLV-GTMVVTALVFELIAITWIYGAKNIYTDLEFSIGRPIFRVWMWLW-VICPAILTGI---- 654
            ||..| |..::..:.||.::|:|.||....|..::..||......|.:.| |..|||..|:    
  Fly   489 DSYAVSGFCLLWLIFFECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFN 553

  Fly   655 LVWWCADDDQYDLLAEYL----PRWA 676
            :|.|..        .:||    |.||
  Fly   554 IVQWTP--------VKYLDYSYPWWA 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 117/527 (22%)
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 124/557 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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