DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment blot and SerT

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster


Alignment Length:798 Identity:169/798 - (21%)
Similarity:288/798 - (36%) Gaps:172/798 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 ATSGRISSSGIVTLSDSNNTLSEIQGGYHDMDHDAVSKNFSISASAHNIT------TASNAKLLP 204
            ||:||  |:......|..:..:|......|.||...:|          :|      .|:|.::|.
  Fly    14 ATTGR--SNPAPWSDDKESPNNEDDSNEDDGDHTTPAK----------VTDPLAPKLANNERILV 66

  Fly   205 AVEDESNKQTKCSVFRGLVLCLCLNLSYANVVRFPRELDRY------GSAYLVPYVVLLFLVGLP 263
            ....|..::|.......|:..:...:...||.|||     |      |.|:||||.:.|...|||
  Fly    67 VSVTERTRETWGQKAEFLLAVIGFAVDLGNVWRFP-----YICYQNGGGAFLVPYCLFLIFGGLP 126

  Fly   264 MVLLEISVGQFLGQGAAHTW-RASPIFKGA----CMISRFASWLSAIWVSL--QAVLALAYIGMF 321
            :..:|:::|||...|....| |..|..||.    |:|.        |::.:  ..::..|...:|
  Fly   127 LFYMELALGQFHRCGCLSIWKRICPALKGVGYAICLID--------IYMGMYYNTIIGWAVYYLF 183

  Fly   322 AS--NDLPFRECAGP------VKLRLSGYLLTGTS-GQECLQLTFLTPFWRNPLYF-----GLLA 372
            ||  :.||:..|..|      :::....:....|| .:|..:...|..:..|.|.|     ..||
  Fly   184 ASFTSKLPWTSCDNPWNTENCMQVTSENFTELATSPAKEFFERKVLESYKGNGLDFMGPVKPTLA 248

  Fly   373 AGLIGLWIVVMLCT-HNAKILRRSIFVFGLVGLVLLCTLTGWEVR-------NSFSRHYFPELWG 429
            ..:.|::::|.... ...:...:.::|..|...|:|..|.   ||       :...::|....| 
  Fly   249 LCVFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLIILL---VRGVSLPGADEGIKYYLTPEW- 309

  Fly   430 FDSNLLAESNIWFNALMQVLFSVNCGFGALPMITGKFLYKGDAVRTSVVYLCFNLLINAIA---- 490
               :.|..|.:|.:|..|:.||:..|||.|..::....:..:..|.:::....|.|.:.:|    
  Fly   310 ---HKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCYRDALITSSINCLTSFLAGFVI 371

  Fly   491 --VTLFMVQFDLSSNGFQNMEELKPLTAIYDR---VLNGSREGDSHLLQHLVPSLIYALII---- 546
              |..:|.....:|.....:|....:..:|..   .::||          :..|:|:.|::    
  Fly   372 FSVLGYMAYVQKTSIDKVGLEGPGLVFIVYPEAIATMSGS----------VFWSIIFFLMLITLG 426

  Fly   547 -------LSAMVSITVAVYTSTRLVPRRPNYVICLIGLVVAVISFAAPKF-----LIARVLDSRL 599
                   |.||::.....|  .|::.||....:.|  |:..:...|.|..     ::...|:...
  Fly   427 LDSTFGGLEAMITALCDEY--PRVIGRRRELFVLL--LLAFIFLCALPTMTYGGVVLVNFLNVYG 487

  Fly   600 VGTMVVTALVFELIAITWIYGAKNIYTDLEFSIGRPIFRVWMWLWV-ICPAILTGILVWWCADDD 663
            .|..::..:..|...:.|.||.....:|:|..:|......|...|. |.|..|..|.::  :...
  Fly   488 PGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLFWRICWTYISPVFLLTIFIF--SIMG 550

  Fly   664 QYDLLAE--YLPRWAPILFVLAVIVIIACVQIFRQVEYNFF--------GMICEASKPAKEWGPA 718
            ..::|.|  |.|.|:..:........:.|:.::  :.|.||        ..:.|:.:|....|..
  Fly   551 YKEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMY--IIYKFFFASKGGCRQRLQESFQPEDNCGSV 613

  Fly   719 DPLARHSWKQWRSVCQDTGRRDFTLRRRGTRDYTHSIK----------------------KGQYS 761
            .|     .:|..|| .|..:....:|...|     |||                      :..||
  Fly   614 VP-----GQQGTSVXHDHAQVHVNIRTSCT-----SIKIYNLNCSSNSNSLSPTTSGAEGRSCYS 668

  Fly   762 ----------SATKYGVQNGGQTQTPMHQQHWKSSTPGNSSPNYSGSMFGDSAIEEDI-SVDKFP 815
                      |..:|..:|..|.|...|..|........||...|.|:....:....: ||...|
  Fly   669 TNLNCNHSCPSEDQYRSRNHQQQQQQHHHHHHHQHQHRISSDIISSSLRQSHSHSLSLCSVQSNP 733

  Fly   816 GITQQQYVPFQASDTKQS 833
            ..|.:  :|..|.|...|
  Fly   734 MATTR--IPLAAEDNNCS 749

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 109/500 (22%)
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 120/570 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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