DRSC/TRiP Functional Genomics Resources

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Protein Alignment blot and Slc6a18

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_058859.2 Gene:Slc6a18 / 29323 RGDID:69352 Length:615 Species:Rattus norvegicus


Alignment Length:649 Identity:133/649 - (20%)
Similarity:231/649 - (35%) Gaps:171/649 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 ASNAKLLPAVEDESNKQTKCSVFRGLVLCLCLNLSYANVVRFPRELDRY-GSAYLVPYVVLLFLV 260
            ||....|..:|||..|..  :..:.|:.|:...:...|:.|||.....: |.|:|:||.:.|...
  Rat     4 ASGMDPLVDIEDERPKWD--NKLQYLLSCIGFAVGLGNIWRFPYLCHTHGGGAFLIPYFIALVFE 66

  Fly   261 GLPMVLLEISVGQFLGQGAAHTWRA-SPIFKGACMISRFASWLSAIWVSLQAVLALAYIGMFASN 324
            |:|:..:|:::||.|.:|:...|:. ||...|..:.....|:|    |||.....|.::..|..|
  Rat    67 GIPLFYIELAIGQRLRRGSIGVWKTISPYLGGVGLGCFSVSFL----VSLYYNTILLWVLWFFLN 127

  Fly   325 D----LPFRECAGPVKLRLSGYLLTGTSGQECLQLTFLTPFW-RNPLYF-----------GLLAA 373
            .    ||:..|  |:.|..:|::      |||.....::.|| |..|..           ..|..
  Rat   128 SFQHPLPWSTC--PLDLNRTGFV------QECQSSGTVSYFWYRQTLNITSDISNTGTIQWKLFL 184

  Fly   374 GLIGLWIVVMLCT-----HNAKILR-RSIFVFGLVGLVLLCTLTGWEVRNSFSRHYFPELWGFDS 432
            .|:..|..|.||.     ...|::. .::|.:.::.:.|:..||........:..:.|.:     
  Rat   185 CLVACWTTVYLCVIRGIESTGKVIYFTALFPYLVLTIFLIRGLTLPGATEGLTYLFTPNM----- 244

  Fly   433 NLLAESNIWFNALMQVLFSVNCGFGALPMITGKFLYKGDAVRTSVVYLCFNLLINAIA-VTLFMV 496
            .:|....:|.:|..|:.||::..||...........:.:..:.:|.....|.:.:..| :|:|.:
  Rat   245 KILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNQPRNNCEKDAVTIALVNSMTSLYASITIFSI 309

  Fly   497 QFDLSSNGF-----QNMEEL---------------KPLTAIY------DRV-------------L 522
            ....:||.:     :|:..|               .|...:|      :||             |
  Rat   310 MGFKASNDYGRCLDRNILSLINEFDFPELSISRDEYPSVLMYLNATQPERVARLPLKTCHLEDFL 374

  Fly   523 NGSREGD-------SHLLQHLVPSLIYALII--------LSAMVSITVAVYTS-------TRLVP 565
            :.|..|.       :..:.|:..:.:::::.        ||:|......|.|.       .:.||
  Rat   375 DKSASGPGLAFIVFTEAVLHMPGASVWSVLFFGMLFTLGLSSMFGNMEGVITPLFDMGILPKGVP 439

  Fly   566 RRP-NYVICLIGLVVAVISFAAPKFLIARVLDSRLVGTMVVTALVFELIAITWIYGAKNIYTDLE 629
            :.. ..|:|.|..:.|:............:.||......::.....|::.:..:||.|....|:|
  Rat   440 KETMTGVVCFICFLSAICFTLQSGSYWLEIFDSFAASLNLIIFAFMEVVGVIHVYGIKRFCDDIE 504

  Fly   630 FSIGRPIFRVWMWLW-VICPAILTGILVWWCADDDQYDLLAEYLP---RWAPILFVLAVIVIIAC 690
            :..||.....|...| |:.|.:|.||.:.:..      |||:..|   .|.|             
  Rat   505 WMTGRRPSLYWQVTWRVVSPMLLFGIFLSYIV------LLAQSSPSYKAWNP------------- 550

  Fly   691 VQIFRQVEYNFFGMICEASKPAKE---------------------WGPADPLA------RHSWK 727
                   :|..|        |::|                     |.|...||      |..||
  Rat   551 -------QYEHF--------PSREEKLYPGWVQVTCVLLSFLPSLWVPGIALAQLLFQYRQRWK 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 109/527 (21%)
Slc6a18NP_058859.2 SLC6sbd_B0AT3 16..591 CDD:212086 125/627 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.000

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