DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment blot and Slc6a3

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_036826.1 Gene:Slc6a3 / 24898 RGDID:3715 Length:619 Species:Rattus norvegicus


Alignment Length:648 Identity:135/648 - (20%)
Similarity:230/648 - (35%) Gaps:176/648 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   195 TTASNAKLLPAVEDESNKQTKCSVFRGLVLCLCLNLSYANVVRFPRELDRY------GSAYLVPY 253
            :|..|....|....|....:|...|...|:...::|  |||.|||     |      |.|:||||
  Rat    45 STLINPPQTPVEAQERETWSKKIDFLLSVIGFAVDL--ANVWRFP-----YLCYKNGGGAFLVPY 102

  Fly   254 VVLLFLVGLPMVLLEISVGQFLGQGAAHTWRASPIFKGACMISRFASWLSAIWVSLQAVLALAYI 318
            ::.:.:.|:|:..:|:::|||..:|||..|:..|:.||........|:....:.::....||.|.
  Rat   103 LLFMVIAGMPLFYMELALGQFNREGAAGVWKICPVLKGVGFTVILISFYVGFFYNVIIAWALHYF 167

  Fly   319 GMFASNDLPFREC---------------------------------------------------A 332
            ....:.|||:..|                                                   .
  Rat   168 FSSFTMDLPWIHCNNTWNSPNCSDAHASNSSDGLGLNDTFGTTPAAEYFERGVLHLHQSRGIDDL 232

  Fly   333 GPVKLRLSGYLLTGTSGQECLQLTFLTPFWRNPLYF----GLLAAGLIGLWIVVML--CTHNAKI 391
            ||.:.:|:.          ||.|..:.      |||    |:..:|.: :||...:  ....|.:
  Rat   233 GPPRWQLTA----------CLVLVIVL------LYFSLWKGVKTSGKV-VWITATMPYVVLTALL 280

  Fly   392 LRRSIFVFGLVGLVLLCTLTGWEVRNSFSRHYFPELWGFDSNLLAESNIWFNALMQVLFSVNCGF 456
            ||         |:.|...:.|  :|...|..::         .|.|:::|.:|..||.||:..||
  Rat   281 LR---------GVTLPGAMDG--IRAYLSVDFY---------RLCEASVWIDAATQVCFSLGVGF 325

  Fly   457 GALPMITGKFLYKGDAVRTSVVYLCFNLLINAIAVTLFMVQFDL-SSNGFQNMEELKPLTAIYDR 520
            |.|...:....:..:..|.:::....|      ::|.|...|.: |..|:...:...|:..:   
  Rat   326 GVLIAFSSYNKFTNNCYRDAIITTSIN------SLTSFSSGFVVFSFLGYMAQKHNVPIRDV--- 381

  Fly   521 VLNGSREGDSHLLQHLVPSLIYALIILSA--------------------MVSITVAVYTSTRLVP 565
                :.:|.. |:..:.|..|..|.:.||                    |.|:...:....:|:.
  Rat   382 ----ATDGPG-LIFIIYPEAIATLPLSSAWAAVFFLMLLTLGIDSAMGGMESVITGLVDEFQLLH 441

  Fly   566 RRPNYVICLIGLVVAVISFAAPKFLIAR-------VLDSRLVGTMVVTALVFELIAITWIYGAKN 623
            |...  :..:|:|:|  :|....|.:..       :||....||.::..::.|.|.:.|.||.:.
  Rat   442 RHRE--LFTLGIVLA--TFLLSLFCVTNGGIYVFTLLDHFAAGTSILFGVLIEAIGVAWFYGVQQ 502

  Fly   624 IYTDLEFSIGRPIFRVWMWLW-VICPAILTGILVWWCADDDQYDLLAEYLPRWAPILFVLAVIVI 687
            ...|::...|:.....|...| ::.|..|..::|............|...|.||..|..:.....
  Rat   503 FSDDIKQMTGQRPNLYWRLCWKLVSPCFLLYVVVVSIVTFRPPHYGAYIFPDWANALGWIIATSS 567

  Fly   688 IACVQIFRQVEY-----NFFGMICEASKPAKEWGPADPLARHSWKQWRSVCQDTGR-RDFTLR 744
            :|.|.|:...::     :|...:..|..|.|:         |.       ..|.|. |.||||
  Rat   568 MAMVPIYATYKFCSLPGSFREKLAYAITPEKD---------HQ-------LVDRGEVRQFTLR 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 110/531 (21%)
Slc6a3NP_036826.1 SLC6sbd_DAT1 60..613 CDD:212083 128/630 (20%)
Interaction with TGFB1I1. /evidence=ECO:0000250 560..589 4/28 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

Return to query results.
Submit another query.