DRSC/TRiP Functional Genomics Resources

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Protein Alignment blot and Slc6a18

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_001035782.1 Gene:Slc6a18 / 22598 MGIID:1336892 Length:615 Species:Mus musculus


Alignment Length:655 Identity:137/655 - (20%)
Similarity:239/655 - (36%) Gaps:166/655 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 ASNAKLLPAVEDESNKQTKCSVFRGLVLCLCLNLSYANVVRFPRELDRY-GSAYLVPYVVLLFLV 260
            ||....|..:|||..|..  :..:.|:.|:...:...|:.|||.....: |.|:|:||.:.|...
Mouse     4 ASGMDPLVDIEDERPKWD--NKLQYLLSCIGFAVGLGNIWRFPYLCQTHGGGAFLIPYFIALVFE 66

  Fly   261 GLPMVLLEISVGQFLGQGAAHTWRA-SPIFKGACMISRFASWLSAIWVSLQAVLALAYIGMFASN 324
            |:|:..:|:::||.|.:|:...|:. ||...|..:.....|:|    |||.....|.::..|..|
Mouse    67 GIPLFYIELAIGQRLRRGSIGVWKTISPYLGGVGLGCFSVSFL----VSLYYNTVLLWVLWFFLN 127

  Fly   325 D----LPFRECAGPVKLRLSGYLLTGTSGQECLQLTFLTPFW-RNPLYF-----------GLLAA 373
            .    ||:..|  |:.|..:|::      |||.....::.|| |..|..           ..|..
Mouse   128 SFQHPLPWSTC--PLDLNRTGFV------QECQSSGTVSYFWYRQTLNITSDISNTGTIQWKLFL 184

  Fly   374 GLIGLWIVVMLCT-----HNAKILR-RSIFVFGLVGLVLLCTLTGWEVRNSFSRHYFPELWGFDS 432
            .|:..|..|.||.     ...|::. .::|.:.::.:.|:..||...........:.|.:     
Mouse   185 CLVACWSTVYLCVIRGIESTGKVIYFTALFPYLVLTIFLIRGLTLPGATEGLIYLFTPNM----- 244

  Fly   433 NLLAESNIWFNALMQVLFSVNCGFGALPMITGKFLYKGDAVRTSVVYLCFNLLINAIA-VTLFMV 496
            ..|....:|.:|..|:.||::..||...........:.:..:.:|:....|.:.:..| :.:|.|
Mouse   245 KTLQNPRVWLDAATQIFFSLSLAFGGHIAFASYNPPRNNCEKDAVIIALVNSMTSLYASIAIFSV 309

  Fly   497 ----------------------QFDLSS---------------NGFQ--NMEELKPLTAIYDRVL 522
                                  :|||..               |..|  .:.:|...|...:..|
Mouse   310 MGFKASNDYGRCLDRNILSLINEFDLPELSISRDEYPSVLMYLNATQTARVAQLPLKTCHLEDFL 374

  Fly   523 NGSREGD-------SHLLQHLVPSLIYALII--------LSAMVSITVAVYT---STRLVPRR-P 568
            :.|..|.       :..:.|:..:.:::::.        ||:|......|.|   ...::|:. |
Mouse   375 DKSASGPGLAFIVFTEAVLHMPGASVWSVLFFGMLFTLGLSSMFGNMEGVITPLLDMGILPKGIP 439

  Fly   569 NYVICLIGLVVAVISFAAPKFLIA------------RVLDSRLVGTMVVTALVFELIAITWIYGA 621
            ..|      :..||.||.  ||.|            .:.||......::.....|::.:..|||.
Mouse   440 KEV------MTGVICFAC--FLSAICFTLQSGGYWLEIFDSFAASLNLIIFAFMEVVGVIHIYGM 496

  Fly   622 KNIYTDLEFSIGRPIFRVWMWLW-VICPAILTGILVWWC-----------ADDDQYDLL----AE 670
            |....|:|:..||.....|...| |:.|.:|.||.:.:.           |.:.||:..    .:
Mouse   497 KRFCDDIEWMTGRRPGLYWQVTWRVVSPMLLFGIFLSYIVLLIQTPPSYKAWNPQYEHFPSREEK 561

  Fly   671 YLPRWAPILFVLAVIVIIACVQIFRQVEYNFFGMICEASKPAKEWGPADPLAR--HSWKQ-WRSV 732
            :.|.|          |.:.||.:      :|...:         |.|...||:  ..:|| |::.
Mouse   562 FYPGW----------VQVTCVLL------SFLPSL---------WVPGVALAQLLSQYKQRWKAT 601

  Fly   733 CQDTG 737
            ..::|
Mouse   602 HLESG 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 113/535 (21%)
Slc6a18NP_001035782.1 SLC6sbd_B0AT3 16..591 CDD:212086 128/626 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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