DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment blot and snf-10

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_505682.2 Gene:snf-10 / 191769 WormBaseID:WBGene00004909 Length:673 Species:Caenorhabditis elegans


Alignment Length:740 Identity:149/740 - (20%)
Similarity:265/740 - (35%) Gaps:223/740 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 TVTPSPQTTRSCISTVSSVVDSGGGRTTATSGRISSSGIVTLSDSNNTLSEIQGGYHDMDHDAVS 182
            |.|.|.:||||    .|:...:...|:|.|      ..|:.:..::|..:....|:..:.:.|: 
 Worm    13 TRTKSEETTRS----ASNETVNDDNRSTTT------EEIIPIKKTSNATAISNIGFKSVTNLAL- 66

  Fly   183 KNFSISASAHNITTASNAKLLPAVEDESNKQTKCSVFRGLVLCLCLNLSYANVVRFPRELDRYGS 247
            :|..:.......|..|..:.:.|.             ...|.|      ..|:..||.....||.
 Worm    67 ENIGLDTKMEGPTWTSKWEAITAT-------------LSFVTC------SGNIWFFPYLCGYYGG 112

  Fly   248 AYLVPYVVLLFLVGLPMVLLEISVGQFLGQGAAHTW-RASP----IFKGACMISRFASWLSAIWV 307
            .:...:......:.:|::.||.::||:........: |.:|    :..|.|.|..|.:...::| 
 Worm   113 WFPYQFTFCYVFIAVPLLYLETALGQYASASPLSVFSRMAPAMAGLSAGMCFIMVFRTISLSVW- 176

  Fly   308 SLQAVLALAYIGMFASNDL----PFREC----AGP--VKLRLSG---YLLTGTSGQECLQLTFL- 358
               |:..|. |...||..:    |:..|    :|.  |..:||.   ::..| |.:||.:...: 
 Worm   177 ---AIYDLT-IFTHASQSIWSTSPWESCQESQSGDYCVNYKLSSKCTWIQPG-SDKECDEYQEML 236

  Fly   359 ----------TPF-----------------WRNPLYFGLLAAGLIGLWIVV-MLCTHNAKILRRS 395
                      :||                 |..|....::.|  :.|||:: ::....:|:|.|:
 Worm   237 IATRGFQQRKSPFMSFVHGLMYKRSITMNDWEPPSVTSIICA--VCLWIIIGIISIGGSKVLGRT 299

  Fly   396 IFVFGLVGLVLLCTLTGW-----------EVRNSFSRHYFPE-------LWGFDSNLLAESNIWF 442
                |:|.|.||  |.|.           :..|.|:..::..       :|.:.         |.
 Worm   300 ----GIVALTLL--LVGTIMLLSYGMSLNDTTNVFTAFFYQSEGYEDKWMWVWS---------WA 349

  Fly   443 NALMQVLFSVNCGFGALPMIT--GKFLYK--GDAVRTSVV----YLCFNLLINAIAVTLFMVQFD 499
            :|....|.::|.|.|.:....  ..|..|  .|.:..|:|    |:|..||              
 Worm   350 DAAAHALRALNVGCGGIQKFASLNNFHNKIHRDVLLISIVSFVFYICTGLL-------------- 400

  Fly   500 LSSNGFQNMEELKPLTAIYDRVLNGSREGDSHLLQHLVPSLIYALIILSAMVSITVAVYTSTRL- 563
                .|..|.|:..|   |...|..|.....:....::.|:|..::..|:|.||.|.::..|.. 
 Worm   401 ----SFMFMAEIGRL---YYPDLEASERIQLYATPVMIESVISEILTNSSMGSIWVFLFWLTLAA 458

  Fly   564 --VPRRPNYVICLIGLVVAVISFAAPKFLIARVLDS-----RLVGTMVVTALV------------ 609
              :....:|:..:..::|..::.:..|:  .:.|.|     .::..|.||.|:            
 Worm   459 CSIQGISSYIWVISSMIVERLNGSRRKY--GKALASWHKRAIILAIMSVTGLISSLPFLGNGGIN 521

  Fly   610 ------------------FELIAITWIYGAKNIYTDLEFSI---GRPIFRVWMWL-W-VICPAIL 651
                              .|:|.::::||.|....::...|   |.|  .|:.|| | ||.|.:|
 Worm   522 LMSSIETFASYGTIFIAFVEVITVSYVYGFKRFSVNIRAMIGGHGPP--NVFWWLNWLVISPILL 584

  Fly   652 TGILVWWCADDDQYDLLAEYLPRWA---------PILFVLAVIVIIACVQIFRQVEYN------- 700
              |:.:.|       ::|.:..:.|         ||.:.|.|:..|..:..|.:.||:       
 Worm   585 --IVTFGC-------IVATFGQKKAFNENSIVSDPIGYSLLVMPCIFVILYFLRDEYDRRKNMEP 640

  Fly   701 FFGMICEASKPAKEWGPADPLARHS 725
            |..||    :...:|||.:|..|.:
 Worm   641 FVVMI----RATGDWGPMNPEDRRN 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 111/555 (20%)
snf-10NP_505682.2 SNF 78..628 CDD:264495 122/625 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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