DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment blot and snf-5

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_496735.1 Gene:snf-5 / 174923 WormBaseID:WBGene00004904 Length:728 Species:Caenorhabditis elegans


Alignment Length:659 Identity:136/659 - (20%)
Similarity:238/659 - (36%) Gaps:183/659 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 RRAKANETDLPTVTPSPQTTRSCISTVSSVVDSGGGRTTATSGRISSSGIVTLSDSNNTLSEIQG 171
            |:|.:.:.|.|: .|.||.    :|..|:.:.|......:|..:|..|.|    |:.||      
 Worm    13 RQAPSVKFDSPS-KPDPQQ----VSQQSNQLSSQKSIQQSTQSKIDPSRI----DTKNT------ 62

  Fly   172 GYHDMDHDAVSKNFSISASAHNITTASNAKLLPAVEDESNKQTKCSVFRGLVLCLCLNLSYANVV 236
                                 .:||.......|..|:|..:....:.|..::..|.|.:...|:.
 Worm    63 ---------------------TVTTTRPTLDTPPEEEEEKRDGFGNSFEFVLTSLGLAVGLGNIW 106

  Fly   237 RFP-RELDRYGSAYLVPYVVLLFLVGLPMVLLEISVGQFLGQGAAHTW-RASPIFKGACMISRFA 299
            ||| |..:..|||:|:||:...||.|||.|..|...||:.|:.....: |..||.:|...:..|.
 Worm   107 RFPTRAYNNGGSAFLIPYLTCAFLFGLPAVYFEFLTGQYQGKSPPVIFRRVRPILEGVGWMGVFV 171

  Fly   300 SWLSAI-------WVSLQAV-LALAYIGMFA--SND-------LPFRE---CAGPVKLRLSGYL- 343
            :.|.||       |:|:..: :...:..:::  :||       :...:   |....|:..:..| 
 Worm   172 AALVAIYYIVIVSWISIYMINICRGHFALWSHCNNDWNNGTSCITMADQYLCKNHTKVMANSTLW 236

  Fly   344 -------------------LTGTSGQECLQLTFLTPF--------------WRNPLYFGLLAAGL 375
                               ..||......:..|:|..              |  |::..:....|
 Worm   237 NSSLPIPDKMVYFNGACQDANGTDVSTATEQYFMTYIVQPSSGMLDFGGFNW--PVFAAMSVCWL 299

  Fly   376 I-GLWIVVMLCTHNAKILRRSIFVFGLVGLVLLCTL---------TGWEVRNSFSRHYFPELWGF 430
            : ||.|:     ..|||:.:..:|..||..||:..|         :|..:...|....:.:|:  
 Worm   300 LTGLGIL-----KGAKIMGKISYVSVLVPYVLVVVLFINGVFQDGSGVGLEMYFGTPNYTKLY-- 357

  Fly   431 DSNLLAESNIWFNALMQVLFSVNCGFGALPMITGKFLYKGDAVRTSVVYLCFNLLIN-----AIA 490
                  |.:.|..||.|:.||::.|.|.|..::.....:.:..|.:::.:..:..::     |:.
 Worm   358 ------EQDTWTEALKQLCFSLSVGHGGLISLSSYSPKRNNIFRDALIVIIGDTTMSLVGGGAVF 416

  Fly   491 VTL-FMVQF------DLSSNGFQNMEELKPLTAIYDRVLNGSREGDSHLLQHLVPSL-----IYA 543
            .|| ::.:.      |:..:|      |.....:|...:.          :..||.|     ...
 Worm   417 ATLGYLAKATGQDVKDVVKSG------LSLAFVVYPEAMT----------RMPVPWLWCFIFFLM 465

  Fly   544 LIILSAMVSITVAVYTSTRLVPRRPNY-------------VICLIGLVVAVISFAAPKFLIARVL 595
            |.:|.|...|.:.....:.:..:.|.:             |:..||||.:    ....:....:.
 Worm   466 LFLLGASTEIALVDVFCSCIYDQYPRFRNRKWIVVIAWCSVLYCIGLVFS----TRAGYYWFEMF 526

  Fly   596 DSRLVGTMVVTALVFELIAITWIYGAKNIYTDLEFSIG--RPIF------RVWM----WLWVICP 648
            |....|...|..:|.||:.:.:|||.:|:..|:...:|  |..|      ..|.    |: ||.|
 Worm   527 DEYAAGFSSVCTVVCELLVMMYIYGFRNVRDDITEVVGHARNKFTGAIGAHSWYFTANWM-VISP 590

  Fly   649 A---ILTGI 654
            :   ||.|:
 Worm   591 SIALILVGL 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 114/547 (21%)
snf-5NP_496735.1 SLC6sbd 83..601 CDD:271359 114/553 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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