DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment blot and snf-1

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_491491.2 Gene:snf-1 / 172119 WormBaseID:WBGene00004900 Length:617 Species:Caenorhabditis elegans


Alignment Length:612 Identity:121/612 - (19%)
Similarity:216/612 - (35%) Gaps:152/612 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 SNAKLLPAVEDESNKQTKCSVFRGLVLCLCLNLSYANVVRFPR-ELDRYGSAYLVPYVVLLFLVG 261
            ||.:|...||:.  :....|....:|..:....:..|.:..|: .|:..|.|:...|.:::.::.
 Worm     9 SNLRLTDLVEEW--RDLWPSKIEFIVSAMAYLFAMTNFLNLPKLILENGGVAFAAAYAIVVGVLC 71

  Fly   262 LPMVLLEISVGQFLGQGAAHT-WRASPIFKG-------------ACMISRFASWLSAI------- 305
            :|.:::|:|:||..|:..... :...|:|:|             ||| ::|.|.|...       
 Worm    72 MPTMVMEMSIGQVTGRAPVLAFYHLFPVFRGIGVSQILFTMVVLACM-TKFLSTLCLFLYYYFWT 135

  Fly   306 ---------WVSLQAVLALAYIGMFASNDLPFRECAGPVK--LRLSGYLLTGTSGQECLQLTFLT 359
                     |::.:|      ...|.|.  |.|| ||.:.  .:::..|  .|...|...:.|||
 Worm   136 FHAGRSGLPWLNCKA------FPEFVSQ--PCRE-AGSITNITQINNRL--NTIQAESSMMQFLT 189

  Fly   360 PF---------WRNPLYFGLLAAGLIGLWIVVMLCTHNAKILRRSIFVFGLVGLVLL------CT 409
            ..         :::..|..|:|.|.|.:.|.|.:|.....:.:...||..|....||      .|
 Worm   190 TLERPSESIADFKDFQYPILIAQGAIWIAIFVAICFGVRFVGKTVAFVLMLAFSSLLVFFLRSAT 254

  Fly   410 LTG--------WEVRNSFSRHYFPELWGFDSNLLAESNIWFNALMQVLFSVNCGFGALPMITGKF 466
            |.|        |:..              |...||:..:|..|:.|.:.....|:||...::...
 Worm   255 LGGVTEILEIYWKAT--------------DWEKLADYQVWRLAIEQAILGTGIGYGAFITMSSYM 305

  Fly   467 LYKGDAVRTSVVYLCFNLLINAI------------AVTLFMVQFDLSSNGFQNMEELKPLTAIYD 519
            ....:.|..|:....::|:|:.:            ::.|.:...:|...|...|..:....:...
 Worm   306 KRSNNLVCDSIFLSVWHLIISFVQTMSIICIVGYLSMKLGIHPTELLETGEDQMWYMLAYVSYLP 370

  Fly   520 RVLNGSREGDSHLLQHLVPSLIYALIILSAMVSIT-----------------VAVYTSTRLVPRR 567
            ::.:|.      ||...:.::...:.||:..|..|                 :|::         
 Worm   371 KLWSGV------LLTICICTMFSVITILALSVLSTFEDAFGENWSKCCRRFFLALF--------- 420

  Fly   568 PNYVICL--IGLVVAVISFAAPKFLIARVLDSRLVG-TMVVTALVFELIAITWIYGAKNIYTDLE 629
                :||  .||.|   .||......|..|.:|.:. ..:...|..||.|..|.|.|..:..||.
 Worm   421 ----VCLFCFGLTV---YFATNAGRHAYELATRSIKYCTIYFILTAELFATAWFYCAHKLGKDLH 478

  Fly   630 -------FSIGRPIFRVWMWLWVICPAILTGILVWWCADDDQYDLLAEYLPRWAPILFVLAVIVI 687
                   .|.....|..:.:|..|.||   |: .:..|.|.::...:..:..|....:|...|.:
 Worm   479 NMMRSRCCSCFGHFFLYFTYLLPILPA---GV-AFLNALDYKFSSFSAPIHEWKYSEYVGIAIAM 539

  Fly   688 IACVQIFRQVEYNFFGMICEASKPAKE 714
            :..:.|   ..|.|..::|......|:
 Worm   540 VPLIPI---PLYFFMTILCACCCKGKD 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 105/534 (20%)
snf-1NP_491491.2 SNF 21..554 CDD:264495 114/587 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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