DRSC/TRiP Functional Genomics Resources

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Protein Alignment blot and Slc6a13

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:XP_006237280.2 Gene:Slc6a13 / 171163 RGDID:620788 Length:608 Species:Rattus norvegicus


Alignment Length:658 Identity:151/658 - (22%)
Similarity:242/658 - (36%) Gaps:190/658 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 ISASAHNITTASNAKLLPAVEDE--------SNKQTKCSVFRGLVLCLCLNLSYANVVRFPRELD 243
            :|.:..|..|.....::..||::        :||........|.::.|      .||.|||    
  Rat     5 VSGTTSNGETKPVCPVMEKVEEDGTLEREQWTNKMEFVLSVAGEIIGL------GNVWRFP---- 59

  Fly   244 RY------GSAYLVPYVVLLFLVGLPMVLLEISVGQFLGQGAAHTWR-ASPIFKGACMISRFASW 301
             |      |.|:.:||::.||..|:|:..||.::||:..||....|| ..|||: |.:.|....:
  Rat    60 -YLCYKNGGGAFFIPYLIFLFTCGIPVFFLETALGQYTNQGGITAWRKICPIFE-ASVPSPGIGY 122

  Fly   302 LSAIWVSLQ-----AVLALAYIGMFAS--NDLPFRECA------GPVKLRLSGYLLTGTSGQECL 353
            .|.:.|||.     .|||.|...:|:|  .|||:..|:      ..|:.:.:...|..||..   
  Rat   123 ASQMIVSLLNVYYIVVLAWALFYLFSSFTTDLPWGSCSHEWNTENCVEFQKTNNSLNVTSEN--- 184

  Fly   354 QLTFLTPFWRNPL--------YFGL----LAAGLIGLWIVVMLCT-HNAKILRRSIF---VFGLV 402
            ..:.:..||...:        :.|.    |...|:..||:...|. ...|...:.::   .|..:
  Rat   185 ATSPVIEFWERRVLKISDGIQHLGSLRWELVLCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYL 249

  Fly   403 GLVLL----CTLTGWEVRNSFSRHYFP---ELWGFDSNLLAESNIWFNALMQVLFSVNCGFGALP 460
            .||:|    .||.|  .......:.:|   .||        :..:|.:|..|:.||.....|.|.
  Rat   250 MLVVLLIRGVTLPG--AAQGIQFYLYPNITRLW--------DPQVWMDAGTQIFFSFAICLGCLT 304

  Fly   461 MITGKFLYKGDAVRTSVVYLCFNLLINAIAVTLFMVQFDL-SSNGFQNMEELKPLTAI------- 517
            .:.....|..:..|..|. ||   ::|  :.|.|:..|.: |..||.:.|:..|::.:       
  Rat   305 ALGSYNKYHNNCYRDCVA-LC---ILN--SSTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGL 363

  Fly   518 ----YDR-------------------VLNGSREGDSHLLQHLVPSLIYALIILSAMVSITVAVYT 559
                |.|                   ||.|.   ||..:  .|.||:.||:.:...|.       
  Rat   364 AFIAYPRAVVMLPFSPLWACCFFFMVVLLGL---DSQFV--CVESLVTALVDMYPRVF------- 416

  Fly   560 STRLVPRRPNYVICLIGLVVAVISFAAPKFLIA-------RVLDSRLV-GTMVVTALVFELIAIT 616
                  |:.|....|| |:|:|:||.....::.       ::.|.... |..::...:||.:.:.
  Rat   417 ------RKKNRREILI-LIVSVVSFFIGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFESLCVA 474

  Fly   617 WIYGAKNIYTDLEFSIGRPIFRVW-----MWLW---VICPAILTGILV--------------WWC 659
            |:|||...|.::|..||   ::.|     .||:   .:|.|.....|:              || 
  Rat   475 WVYGASRFYDNIEDMIG---YKPWPLIKYCWLFFTPAVCLATFLFSLIKYTPLTYNKKYTYPWW- 535

  Fly   660 ADDDQYDLLAEYLPRWAPILFVLAVIVIIACVQIFR------QVEYNFFGMICEASK-PAKE--- 714
                 .|.|.     |   |..|:.:|.|....|::      .:......::|.|.. |.|.   
  Rat   536 -----GDALG-----W---LLALSSMVCIPAWSIYKLRTLKGPLRERLRQLVCPAEDLPQKSQPE 587

  Fly   715 -WGPADPL 721
             ..||.|:
  Rat   588 LTSPATPM 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 128/543 (24%)
Slc6a13XP_006237280.2 SLC5-6-like_sbd 32..581 CDD:382020 141/615 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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