DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment blot and Slc6a12

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_001368835.1 Gene:Slc6a12 / 14411 MGIID:95628 Length:628 Species:Mus musculus


Alignment Length:558 Identity:127/558 - (22%)
Similarity:213/558 - (38%) Gaps:151/558 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 LSYANVVRFPRELDRY------GSAYLVPYVVLLFLVGLPMVLLEISVGQFLGQGAAHTWR-ASP 287
            :...||.|||     |      |.|:.:||.:..|..|:|:..||:::||:..||:...|| ..|
Mouse    68 IGLGNVWRFP-----YLCYKNGGGAFFIPYFIFFFSCGIPVFFLEVALGQYSSQGSVTAWRKICP 127

  Fly   288 IFKGACMIS-RFASWLSAIWVSLQAVLALAYIGMFASN--DLPFRECAGPVKLR-----LSGYLL 344
            :.:|..|.| ...|:|:..::   .:||.|...:|:|.  :||:..|.......     |:....
Mouse   128 LLQGIGMASVVIESYLNIYYI---IILAWALFYLFSSFTWELPWTTCTNSWNTEHCVDFLNHSSA 189

  Fly   345 TGTSGQECLQLTFLTP---FWRNPLYFGL-------------LAAGLIGLWIVVMLCT-HNAKIL 392
            .|.|..|    .|.:|   ||...: .|:             ||..|:..||:...|. ...|..
Mouse   190 RGVSSSE----NFTSPVMEFWERRV-LGITSGIHDLGSLRWELALCLLLAWIICYFCIWKGVKST 249

  Fly   393 RRSIF---VFGLVGLVLLCTLTGWEVRNSFSRHYF---PELWGFDSNLLAESNIWFNALMQVLFS 451
            .:.::   .|..:.|::| .:.|..:..::....|   |:|.     .|.:..:|.:|..|:.||
Mouse   250 GKVVYFTATFPYLMLIIL-LIRGVTLPGAYQGIVFYLKPDLL-----RLKDPQVWMDAGTQIFFS 308

  Fly   452 VNCGFGALPMITGKFLYKGDAVRTSVVYLCFNLLINAIAVTLFMVQFDL-SSNGFQNMEELKPLT 515
            .....|.|..:.....|..:..|.|:. |||   :|  :.|.|:..|.: |..||.:.|:..|::
Mouse   309 FAICQGCLTALGSYNKYHNNCYRDSIA-LCF---LN--SATSFVAGFVVFSILGFMSQEQGIPIS 367

  Fly   516 AIYDRVLNGSREGDSHL----------LQHLVPSLIYALIIL----SAMVSITVAVYTSTRLVP- 565
            .:.:     |..|.:.:          |..|...|.:.:::.    |..|.:...|..|..:.| 
Mouse   368 EVAE-----SGPGLAFIAFPKAVTMMPLSQLWSCLFFIMLLFLGLDSQFVCMECLVTASMDMFPQ 427

  Fly   566 ------RRPNYVICLIGLVVAVISFAAPKFLIARVLDSRLVGTMVVTAL---------------V 609
                  ||.     |:.|.::|:.:.....|:..       |.|.:..|               :
Mouse   428 QLRKSGRRE-----LLILAISVLCYLMGLLLVTE-------GGMYIFQLFDYYASSGICLLFLSL 480

  Fly   610 FELIAITWIYGAKNIYTDLEFSIGRPIFRVW-----MWLWV---ICPAILTGILVWWCADDDQYD 666
            ||:|.|.|:|||...|.::|..||   :|.|     .||::   :|.|..             :.
Mouse   481 FEVICIGWVYGADRFYDNVEDMIG---YRPWPLVKISWLFLTPGLCLATF-------------FF 529

  Fly   667 LLAEY----------LPRWAPILFVLAVIVIIACVQIF 694
            .|::|          .|.|...:..|.....:|||.:|
Mouse   530 SLSKYTPLKYNNVYMYPSWGYSIGWLLAFSSMACVPLF 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 118/511 (23%)
Slc6a12NP_001368835.1 SLC5-6-like_sbd 49..589 CDD:382020 127/558 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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