DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment blot and slc6a8

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:XP_002935539.1 Gene:slc6a8 / 100489909 XenbaseID:XB-GENE-986840 Length:644 Species:Xenopus tropicalis


Alignment Length:532 Identity:115/532 - (21%)
Similarity:193/532 - (36%) Gaps:128/532 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 LVLCLCLNLSYANVVRFPRELDRY------GSAYLVPYVVLLFLVGLPMVLLEISVGQFLGQGAA 280
            ::.|:...:...||.|||     |      |..:|:||:::..|.|:|:..|||::|||:..|:.
 Frog    68 IMSCVGFAVGLGNVWRFP-----YLCYKNGGGVFLIPYILIAILGGIPIFFLEIALGQFMKAGSI 127

  Fly   281 HTWRASPIFKGACMISRFASWLSAIWVSLQAVLALA----YIGMFASNDLPFRECAGP------V 335
            ..|..:|:|:|.    .|||.:...:.:...:|.|.    |:....|..||:..|...      |
 Frog   128 AVWNIAPLFQGI----GFASVVIVFFCNTYYILILTWGVYYLVKSFSAVLPWSHCNNTWNSPDCV 188

  Fly   336 KLRLSGYLLTGTSGQECLQLTF---------LTPFWRNP---LYFGL---------LAAGLIGLW 379
            .:........||:......||.         :|.||...   |..||         |...|||.|
 Frog   189 DIFRQEDCTNGTANSTFGNLTCNELADKVSPITEFWEKKVLRLSSGLDDIGSINWELLLCLIGCW 253

  Fly   380 IVVMLCT-HNAKILRRSIFVFGLVGLVLLCTLTGWEVRNSFSR-------HYFPELWGFDSNLLA 436
            ::|..|. ...|...:.::.......|:|..|.   ||.:...       :|....|    :.|.
 Frog   254 LLVYFCVWKGVKSTGKIVYFTATFPYVVLLILL---VRGAMLPGATEGIIYYLKPDW----SKLG 311

  Fly   437 ESNIWFNALMQVLFSVNCGFGALPMITGKFLYKGDAVRTSVVYLCFNLLINAIAVTLFMVQFDL- 500
            .:.:|.:|..|:.||...|.|||..:.....:..|..:.:.:....|      :.|.|...|.: 
 Frog   312 TAQVWIDAGTQIFFSYAIGLGALTALGSYNRFNNDCYKDAFILAVIN------SGTSFFAGFVVF 370

  Fly   501 SSNGFQNMEELKPLTAI-----------YDRVLNGSREGDSHLLQHLVP---SLIYALIIL---- 547
            |..||...|:...::.:           |.|.::         |..:.|   :|.:.:::|    
 Frog   371 SILGFMANEQGVDISKVAESGPGLAFIAYPRAVS---------LMPVAPLWSALFFFMLLLLGLD 426

  Fly   548 SAMVSITVAVYTSTRLVPRRPNY---------VICLIGLVVAVISFAAPKFLIARVLDSRLVGTM 603
            |..|.:...:.....|:|.|..:         :.|.|..::.:.........:.::.|......|
 Frog   427 SQFVGVEGLITAILDLLPARYYFRFQREIAVAICCAIMFLIDLSMLTEGGMYVFQLFDYYSASGM 491

  Fly   604 VVTALVF-ELIAITWIYGAKNIYTDLEFSIG-RPIFRVWM-WLW-----VICPAILTGILV---- 656
            .:....| :.:.:.|:|||.....|:...|| ||.  .|| |.|     .:|.||....|:    
 Frog   492 TLLWQTFWQCVVVAWVYGADRFMDDIARMIGYRPF--PWMKWCWSFVTPFVCMAIFLFNLINYKP 554

  Fly   657 ----------WW 658
                      ||
 Frog   555 LTYNNSYTYPWW 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 115/532 (22%)
slc6a8XP_002935539.1 SLC5-6-like_sbd 58..644 CDD:382020 115/532 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.