DRSC/TRiP Functional Genomics Resources

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Protein Alignment blot and slc6a18

DIOPT Version :9

Sequence 1:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_001108369.1 Gene:slc6a18 / 100141332 ZFINID:ZDB-GENE-080219-9 Length:618 Species:Danio rerio


Alignment Length:629 Identity:141/629 - (22%)
Similarity:238/629 - (37%) Gaps:145/629 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 LVLCLCLNLSYANVVRFPRELDRY-GSAYLVPYVVLLFLVGLPMVLLEISVGQFLGQGAAHTWRA 285
            |:.|:...:...|:.|||.....| |.|:|:||::.|...|||::.||:::||.|.:|:...|.:
Zfish    23 LLTCVGFAVGLGNIWRFPYLCQIYGGGAFLIPYLIALVFEGLPLLYLELAIGQSLRKGSIGVWHS 87

  Fly   286 -SPIFKGACMISRFASWLSAIWVSLQAVLALAYIGMFASNDLPFRECAGPVKLRLSGYLLTGTSG 349
             ||:..|..:.|...|:|..::.:......|.|......:.||:.:|  |:...|.||:      
Zfish    88 ISPLLGGVGVASMVVSFLVGLFYNTILAWVLWYFFHSFEDPLPWSQC--PINDNLEGYV------ 144

  Fly   350 QECLQLTFLTPFW-RNPLYFG-----------LLAAGLIGLWIVVMLC-THNAKILRRSIFVFG- 400
            :||:..|.:..:| |..|...           .|...|...|.:|.:| ....:.:.::::|.. 
Zfish   145 EECVSSTPVNYYWYRQTLNISPDIEQSGSLQWTLVLCLATAWSIVYICFIRGIETIGKAVYVTAT 209

  Fly   401 ------LVGLVLLCTLTGWEVRNSFSRHYFPELWGFDSNLLAESNIWFNALMQVLFSVNCGFGAL 459
                  .:.||...||.|   .....::.|...|    .||....:|.:|..|:.||::..||.|
Zfish   210 FPYLVLTIFLVRALTLPG---ATDGLQYLFTPDW----TLLTNPQVWLDAATQIFFSLSLAFGGL 267

  Fly   460 PMITGKFLYKGDAVRTSVVYLCFNLLINAIAVTLF-------MVQFDLSSNGFQNM--EELKPLT 515
            ...:.....|.|..|.::    |..:||: |.:|:       ::.|..:|| |.:.  ..:..||
Zfish   268 IAFSSYNPKKNDCERDAL----FVGIINS-ATSLYASIPIFAILGFKATSN-FNSCVNSNILDLT 326

  Fly   516 AIYD---------------RVLNGSREG--DSHLLQHLV-------------------------- 537
            ..:|               |.||.|...  .|..|:|.|                          
Zfish   327 NAFDIGDRNITIENYDSWLRDLNASDPDRVSSLNLKHCVLKNFLDQSASGTGLAFIVFTEAVIEM 391

  Fly   538 -PSLIYALII--------LSAMVSITVAVYT---STRLVPR-RPNYV----ICLIGLVVAVISFA 585
             .|.::|::.        ||:|......|.|   ...:||| .|..:    ||::..:||:|...
Zfish   392 PGSQVWAVLFFVMLFSLGLSSMFGNLEGVLTPLLDLHMVPRWMPKEIFTGLICVVNFLVALIFTL 456

  Fly   586 APKFLIARVLDSRLVGTMVVTALVFELIAITWIYGAKNIYTDLEFSIGRPIFRVWMWLWV-ICPA 649
            ........:.:|.:....::....||:||:...||.|....|:|...||.....|...|: |.|.
Zfish   457 GSGNYWLEIFNSYVGSVPLLVIAFFEIIAVVCFYGIKRFSDDIEQMTGRRPNLFWRCCWMGISPV 521

  Fly   650 ILTGILVWWCADDDQ----YDLLAEYLPRWAP-------------ILFVLAVIVIIACVQIFRQV 697
            :|..:||.:.....|    |       |.|.|             ..:|.::.|:::.|.:....
Zfish   522 MLLVVLVAYVVVQVQKHPTY-------PAWNPQYENFPETEEKPYSTWVFSICVLLSSVPVISIP 579

  Fly   698 EYNFFGMICEASKPAKEWGPADPLARHSWKQWRSVCQDTGRRDF 741
            ....:.:|...:.|..  |..:|....|:      ..||..:.|
Zfish   580 IVALYRLIRRHTHPHS--GYPNPYTNQSY------TDDTHTQSF 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 125/528 (24%)
slc6a18NP_001108369.1 SLC5-6-like_sbd 12..587 CDD:294310 133/591 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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