DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad74A and shg

DIOPT Version :9

Sequence 1:NP_001246814.1 Gene:Cad74A / 39936 FlyBaseID:FBgn0036715 Length:1820 Species:Drosophila melanogaster
Sequence 2:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster


Alignment Length:1134 Identity:270/1134 - (23%)
Similarity:441/1134 - (38%) Gaps:273/1134 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   476 ANDN-APVFDQ-GTYRFTAAENLPVDAIIGHVKATDLDSGEFGHVRY--VLKGFGADNFYVNPET 536
            :.|| .|.|.. ..|.....|..|.:..:..|:|.|.|..:.  :||  |...|....|::||.|
  Fly    79 SGDNRKPAFKNCAGYAPKVKEEQPENTYVLTVEAVDPDPDQV--IRYSIVQSPFERPKFFINPST 141

  Fly   537 GGVYLLKPLDYEK---QSSYSLTVVAIDGGQREAN--ANLFVGVTDVNDNHPNFESKEYSRTIRE 596
            |.::.....|.::   :....:||.|.|.|....:  ....|.:.|:|||.|.|....|..::.|
  Fly   142 GVIFTTHTFDRDEPIHEKFVFVTVQATDNGLPPLDDVCTFNVTIEDINDNAPAFNKARYDESMSE 206

  Fly   597 GAALFEPQFFVRAHDADGPSQGNGR-VKYSIVSENSIAGNVFRIEPDTGEIVIQKAARSMDTERG 660
            .|   :|...|....|.....||.. |:|.|:.|...  ..|:|:.::|.|.::   |.:|...|
  Fly   207 NA---QPDAVVMTISASDFDDGNNSLVEYEILRERDF--QYFKIDKESGIIYLK---RPIDKRPG 263

  Fly   661 E-YELVVSATDFGI---PPLSNTTRVLVRVGISGNQRPIFRGHFQNMENLPIIGPPSYRVSIPEN 721
            : |.::|.|  :.:   ||......|.:||..|..:.|.|            :.|....:.:.||
  Fly   264 QSYAIIVRA--YNVVPDPPQDAQIEVRIRVVESSIKPPSF------------VNPIDTPIYLKEN 314

  Fly   722 AAAGSNVTSVSA------HDPDGLDSLL-----RYRIVGANDNFEIDEISGLITVSPQARIDRD- 774
            .   .|.|...|      :.||..:.:.     |.....:.:.|..::|...:|:|....:|.: 
  Fly   315 L---KNFTHPIATLRAVSNMPDKPEVIFELNTGRTEQTNSKNTFVFNQIGNEVTISLGKTLDYEA 376

  Fly   775 -SNMNSFEIIVNAVDSGTPIPETATTTVYVNVKDINDERPKFEQNSYATYVSERTAVGESVLRVK 838
             ::.....|:.|..:.||      ...:.:.|:|:||..|.:.:....| :.|....|..|::|:
  Fly   377 ITDYTLTMIVRNTHELGT------EHQIKIQVEDVNDNIPYYTEVKSGT-ILENEPPGTPVMQVR 434

  Fly   839 AIDKDLNSKLEYSMVGPVAATTKAGVSIANRSNYRL---QEAFRVDSQSGEIFVNGTLRHDVAAI 900
            |.|.|                   |.|..|..::.|   :|.|.:|..:|          ::.|:
  Fly   435 AFDMD-------------------GTSANNIVSFELADNREYFTIDPNTG----------NITAL 470

  Fly   901 IIFTVGVRDL-NAEV-----DPEGQVDTTEVTVYVQSFQ-------DTNPVFKNTGWTSSR---- 948
            ..|....||. |.:|     .|....|..|.....|.|:       |..|.|:...:.:.|    
  Fly   471 TTFDREERDFYNVKVIASDNSPSSLFDNGEPNRGHQVFRISIGDKNDHKPHFQQDKYLAERLLED 535

  Fly   949 -----PVIDVKIKEEMPIDSALFILQAEDPVTRQPITSFELIEPKQV-DYFQVAERTGEVILKKR 1007
                 .||:||.::|   |:|..||.:              ||...| |.|::..:||::.:.::
  Fly   536 ANTNTEVIEVKAEDE---DNASQILYS--------------IESGNVGDAFKIGLKTGKITVNQK 583

  Fly  1008 LDYEALGDTGPEFELQVRANSADRQRSTVSRVNITVENVNDNSPRFERNSYQATIIENRPHPERV 1072
            ||||.:    .|:||:|||  .|......:.|.|.:|:||||.|.|::: |..||:|...:.:.:
  Fly   584 LDYETI----TEYELKVRA--FDGIYDDYTTVVIKIEDVNDNPPVFKQD-YSVTILEETTYDDCI 641

  Fly  1073 IRVRALDKDAVLNARDERLGYHKIIYSLQGEHAMLFDINNTTGEIIVASGQTIDRERT---PRIQ 1134
            :.|.|.|.|    .:|.....| |:||:.......:.|:|:....:|   :|:||:..   ...|
  Fly   642 LTVEAYDPD----IKDRNADQH-IVYSIHQNDGNRWTIDNSGCLRLV---KTLDRDPPNGHKNWQ 698

  Fly  1135 LQIKAEDSPGRPTDAKQSVVELQIEVLDVNDNAPEFTQKKYSTVIPENAQIDSFVLQLEAVDADE 1199
            :.|||.|..|..|.. .:|.|:.:.:.|:||||| |...:......||.. ...|:||:|.|.|:
  Fly   699 VLIKANDEDGVGTTV-STVKEVTVTLKDINDNAP-FLINEMPVYWQENRN-PGHVVQLQANDYDD 760

  Fly  1200 GLGGEVRYELVNEGEANGLFKIDTKSGL-ISTRRNLTG----------KGRAHPYVLIVRAQDNG 1253
                       ..|..|..|.||:::.. |.|:.::.|          :.....|.:.:|..|:|
  Fly   761 -----------TPGAGNFTFGIDSEATPDIKTKFSMDGDYLHANVQFDREAQKEYFIPIRISDSG 814

  Fly  1254 NQMPKQPTLSTDTDVRIYIGDVSANDGVPYFLSPRVGQMANVTENAVTGAP---VFQVIASDPDD 1315
              :|:|..:|.   :.:.||||  ||......|.|:     ...|....||   :.:|...|.||
  Fly   815 --VPRQSAVSI---LHLVIGDV--NDNAMSEGSSRI-----FIYNYKGEAPETDIGRVFVDDLDD 867

  Fly  1316 ESTPSGTITYRILPDTPDAEAFVIDAHSGLIT----------------TRQSM--DRETKDMYRI 1362
            .........::.||.    :.|.::..:|:||                |..||  .|.:.|.|  
  Fly   868 WDLEDKYFEWKDLPH----DQFRLNPSTGMITMLVHTAEGEYDLSFVVTEDSMFVPRHSVDAY-- 926

  Fly  1363 LLEVSDNGQPKQSATRILQIAILDVDDHE----PRFAREADAGPLSMSVREEEPAGTIVGNFSAL 1423
             :.|.....|:::..:...|..::|...|    ||..:..||  ||:..|              |
  Fly   927 -VTVVVRELPEEAVDKSGSIRFINVTKEEFISVPRDFQSPDA--LSLKDR--------------L 974

  Fly  1424 DEDLGE--NAAIDYVIIDGNNEQLFTIERNNESLAILKTKKPIDREQVESFTLTIKCLKLGEPGY 1486
            ...|.:  |.::       :|..:||:.:|                  |:.||.::....|.|.|
  Fly   975 QLSLAKLFNTSV-------SNVDVFTVLQN------------------ENHTLDVRFSAHGSPYY 1014

  Fly  1487 ---KFIGDPYDRQ-------DLSHLRINV 1505
               |..|.....|       ||..|.:|:
  Fly  1015 APEKLNGIVAQNQQRLENELDLQMLMVNI 1043

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad74ANP_001246814.1 Cadherin_repeat 33..124 CDD:206637
Cadherin_repeat 132..240 CDD:206637
Cadherin_repeat 249..361 CDD:206637
Cadherin_repeat 369..479 CDD:206637 0/2 (0%)
Cadherin_repeat 487..581 CDD:206637 25/100 (25%)
Cadherin_repeat 589..686 CDD:206637 25/101 (25%)
Cadherin_repeat 713..810 CDD:206637 19/109 (17%)
Cadherin_repeat 819..936 CDD:206637 28/132 (21%)
Cadherin_repeat 953..1049 CDD:206637 30/96 (31%)
Cadherin_repeat 1057..1166 CDD:206637 30/111 (27%)
Cadherin_repeat 1175..1279 CDD:206637 27/114 (24%)
Cadherin_repeat 1293..1390 CDD:206637 23/117 (20%)
Cadherin_repeat 1402..1513 CDD:206637 23/116 (20%)
Cadherin_repeat 1523..1628 CDD:206637
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637 25/99 (25%)
Cadherin_repeat 200..292 CDD:206637 26/101 (26%)
CA 332..410 CDD:214520 16/83 (19%)
Cadherin_repeat 417..518 CDD:206637 27/130 (21%)
Cadherin_repeat 531..619 CDD:206637 33/110 (30%)
Cadherin_repeat 627..729 CDD:206637 30/110 (27%)
Cadherin_repeat 736..834 CDD:206637 28/116 (24%)
LamG 1127..1294 CDD:238058
Cadherin_C 1358..1489 CDD:279398
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24026
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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