DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad74A and Cdh20

DIOPT Version :10

Sequence 1:NP_648973.1 Gene:Cad74A / 39936 FlyBaseID:FBgn0036715 Length:1820 Species:Drosophila melanogaster
Sequence 2:NP_001012766.2 Gene:Cdh20 / 363948 RGDID:1305438 Length:801 Species:Rattus norvegicus


Alignment Length:596 Identity:162/596 - (27%)
Similarity:264/596 - (44%) Gaps:79/596 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   916 PEGQVDTTEVTVYVQSFQDT------NPVFKNTGWTSSRPVIDVKIKEEMP--IDSALFILQAED 972
            ||.::||. .:...||.|.:      |..|....:|.:.|:...|:..:|.  ..|..:||..|.
  Rat    39 PEVELDTL-FSGKPQSHQRSRRSWVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEG 102

  Fly   973 PVTRQPITSFELIEPKQVDYFQVAERTGEVILKKRLDYEALGDTGPEFELQVRANSADRQ----R 1033
            ...                .|.:.:.||::...:|||.|      ...:..:||.:.||:    .
  Rat   103 AGI----------------VFTIDDTTGDIHAIQRLDRE------ERAQYTLRAQALDRRTGRPM 145

  Fly  1034 STVSRVNITVENVNDNSPRFERNSYQATIIENRPHPERVIRVRALDKDAVLNARDERLGYH-KII 1097
            ...|...|.::::|||.|:|....|.||:.|..|....||:|.|.|.|      |...|.. :::
  Rat   146 EPESEFIIKIQDINDNEPKFLDGPYVATVPEMSPVGTSVIQVTATDAD------DPTYGNSARVV 204

  Fly  1098 YS-LQGEHAMLFDINNTTGEIIVASGQTIDRERTPRIQLQIKAEDSPGRPTDAKQSVVELQIEVL 1161
            || |||:  ..|.:::.|| :|..:...:|||.....::.|:|:|..|: .........:.|.:.
  Rat   205 YSILQGQ--PYFSVDSKTG-VIRTALMNMDREAKEYYEVIIQAKDMGGQ-LGGLAGTTTVNITLS 265

  Fly  1162 DVNDNAPEFTQKKYSTVIPENAQIDSFVLQLEAVDADEGLGGEVRYELVNEGEANGLFKIDT--- 1223
            |||||.|.|.||.|...:.|:|.:.|.|.::.|.|.|||:..|::|.:| :|:....|.|:|   
  Rat   266 DVNDNPPRFPQKHYQMSVLESAPVSSTVGRVFAKDLDEGINAEMKYTIV-DGDGADAFDINTDPN 329

  Fly  1224 -KSGLISTRRNLTGKGRAHPYVLIVRAQDNGNQM------PKQPTLSTDTDVRIYIGDVSANDGV 1281
             :.|:|:.::.|:.:.: ..|.|.|...:...:|      |.|.|    |.|.|.:.||   |..
  Rat   330 FQVGIITVKKPLSFESK-KSYTLKVEGSNPHVEMRFLNLGPFQDT----TTVHISVEDV---DEP 386

  Fly  1282 PYFLSPRVGQMANVTENAVTGAPVFQVIASDPDDESTPSGTITYRILPDTPDAEAFVIDAHSGLI 1346
            |.| .|.. ....|.|:...|..:..:.|.|||   ..:.:|.|.|...:.....|.:|..:|.:
  Rat   387 PVF-EPGF-YFVEVPEDVTIGTTIQIISAKDPD---VTNNSIRYSIDRGSDPGRFFYVDITTGAL 446

  Fly  1347 TTRQSMDRETKDMYRILLEVSDNGQPKQSATRILQIAILDVDDHEPRFAREADAGPLSMSVREEE 1411
            .|.:.:|||....:.|.:...:...|.|..:..:.|.:|||:|:.|.|.|..:|     .:.|..
  Rat   447 MTARPLDREEFSWHNITVLAMEMNNPSQVGSVAVTIKVLDVNDNAPEFPRFYEA-----FICENA 506

  Fly  1412 PAGTIVGNFSALDEDLGENAAIDYVII--DGNNEQLFTIERNNESLAILKTKKPIDREQVES-FT 1473
            .||.::...||:|:|...|....|..:  :..|...||:..|.::.|.:.|::...|:|.:| |.
  Rat   507 KAGQLIQTVSAVDQDDPHNGQHFYYSLAPEAANNPNFTVRDNQDNTARILTRRSGFRQQEQSVFY 571

  Fly  1474 LTIKCLKLGEP 1484
            |.|.....|:|
  Rat   572 LPILIADSGQP 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad74ANP_648973.1 Cadherin_repeat 33..124 CDD:206637
Cadherin_repeat 132..240 CDD:206637
Cadherin_repeat 249..361 CDD:206637
Cadherin_repeat 487..581 CDD:206637
Cadherin_repeat 589..686 CDD:206637
Cadherin_repeat 713..810 CDD:206637
Cadherin_repeat 819..936 CDD:206637 7/25 (28%)
Cadherin_repeat 953..1049 CDD:206637 20/101 (20%)
Cadherin_repeat 1057..1166 CDD:206637 33/110 (30%)
Cadherin_repeat 1175..1279 CDD:206637 32/113 (28%)
Cadherin_repeat 1293..1390 CDD:206637 24/96 (25%)
Cadherin_repeat 1402..1513 CDD:206637 23/86 (27%)
Cadherin_repeat 1523..1628 CDD:206637
Cdh20NP_001012766.2 None
Blue background indicates that the domain is not in the aligned region.

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