DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cad74A and Cdh18

DIOPT Version :10

Sequence 1:NP_648973.1 Gene:Cad74A / 39936 FlyBaseID:FBgn0036715 Length:1820 Species:Drosophila melanogaster
Sequence 2:NP_001074768.1 Gene:Cdh18 / 320865 MGIID:1344366 Length:790 Species:Mus musculus


Alignment Length:558 Identity:155/558 - (27%)
Similarity:253/558 - (45%) Gaps:92/558 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   993 FQVAERTGEVILKKRLDYEALGDTGPEFELQVRANSADRQRS----TVSRVNITVENVNDNSPRF 1053
            |.:.:.||::...|.||.|      .:....:.|.:.||:.:    ..|...|.|:::|||:|:|
Mouse   101 FIIDDTTGDIHSTKSLDRE------QKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKF 159

  Fly  1054 ERNSYQATIIENRPHPERVIRVRALDKDAVLNARDERLGYH-KIIYS-LQGEHAMLFDINNTTGE 1116
            ....|..|:.|.......|::|.|.|.|      |...|.. :::|| |||:  ..|.::..|| 
Mouse   160 TDGPYIVTVPEMSDMGTSVLQVTATDAD------DPTYGNSARVVYSILQGQ--PYFSVDPKTG- 215

  Fly  1117 IIVASGQTIDRERTPRIQLQIKAEDSPGRPTDAKQSVVELQIEVLDVNDNAPEFTQKKYSTVIPE 1181
            :|..:...:|||......:.|:|:|..|:......|.. :.|.:.|||||.|.|.||.|...:||
Mouse   216 VIRTALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTT-VNITLTDVNDNPPRFPQKHYQLYVPE 279

  Fly  1182 NAQIDSFVLQLEAVDADEGLGGEVRYELVNEGEANGLFKI----DTKSGLISTRRNLTGKGRAHP 1242
            :||:.|.|.:::|.|||.|...::.|.:.| |:..|:|.|    ||:.|::|.::.|..: :...
Mouse   280 SAQVGSAVGKIKANDADTGSNADMTYSITN-GDGIGVFSISTDKDTREGILSLKKPLNYE-KKKS 342

  Fly  1243 YVLIVRAQDN------GNQMP-KQPTLSTDTDVRIYIGDVSANDGVPYFLSPRVGQMANVTENAV 1300
            |.|.:...:.      .:..| |..|:     :::.:|||   |..|.|..|  ..:..|.|||.
Mouse   343 YTLNIEGANTHLDFRFSHLGPFKDATM-----LKVIVGDV---DEPPLFSMP--SYVMEVYENAK 397

  Fly  1301 TGAPVFQVIASDPDDESTPSGTITYRILPDTPDAEAFVIDAHSGLITTRQSMDRETKDMYRILLE 1365
            .|..|..|:|.|||   :.:..:.|.|...|.:...|.|||::|.|.|.:.:|||....|.|.:.
Mouse   398 IGTIVGTVLAQDPD---SANSLVRYFINHSTEEERFFNIDANTGTIKTSKVLDREETPWYNITVT 459

  Fly  1366 VSDNGQPKQSATRILQIAILDVDDHEPRFAREADAGPLSMSVREEEPAGTIVGNFSALDEDLGEN 1430
            .|:|..|...:...:.|.:|||:|:.|..|||.|     :.|.|....|.::...:|.|:|...|
Mouse   460 ASENDNPDLLSHVSVGIRVLDVNDNPPELAREYD-----IVVCENSKPGQVIHTITATDKDDFAN 519

  Fly  1431 AAIDYVIIDGNNEQL-----FTIERNNESLAILKTKKPIDREQVESFTLTIKCLKLGEPGYKFIG 1490
            ....:..:|   |:|     ||::.|.::.|.:.|::       ..|:.|:              
Mouse   520 GPRFHFFLD---ERLPMNPNFTLKDNEDNTASILTRR-------RRFSRTM-------------- 560

  Fly  1491 DPYDRQDLSHLRINVRVLDIDDNLPKFEQPDPTVGIRI 1528
                 ||:.:|.|.:.    |..:|.... ..|:.||:
Mouse   561 -----QDVYYLPIMIS----DGGIPSLSS-SSTLTIRV 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad74ANP_648973.1 Cadherin_repeat 33..124 CDD:206637
Cadherin_repeat 132..240 CDD:206637
Cadherin_repeat 249..361 CDD:206637
Cadherin_repeat 487..581 CDD:206637
Cadherin_repeat 589..686 CDD:206637
Cadherin_repeat 713..810 CDD:206637
Cadherin_repeat 819..936 CDD:206637
Cadherin_repeat 953..1049 CDD:206637 14/59 (24%)
Cadherin_repeat 1057..1166 CDD:206637 31/110 (28%)
Cadherin_repeat 1175..1279 CDD:206637 31/114 (27%)
Cadherin_repeat 1293..1390 CDD:206637 33/96 (34%)
Cadherin_repeat 1402..1513 CDD:206637 22/115 (19%)
Cadherin_repeat 1523..1628 CDD:206637 3/6 (50%)
Cdh18NP_001074768.1 CA 79..157 CDD:214520 16/61 (26%)
Cadherin_repeat 163..264 CDD:206637 31/110 (28%)
Cadherin_repeat 272..379 CDD:206637 31/116 (27%)
Cadherin_repeat 387..484 CDD:206637 33/99 (33%)
Cadherin_repeat 491..589 CDD:206637 28/137 (20%)
CADH_Y-type_LIR 723..782 CDD:460041
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.