DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad74A and Cdh12

DIOPT Version :10

Sequence 1:NP_648973.1 Gene:Cad74A / 39936 FlyBaseID:FBgn0036715 Length:1820 Species:Drosophila melanogaster
Sequence 2:NP_001414404.1 Gene:Cdh12 / 301887 RGDID:1566350 Length:794 Species:Rattus norvegicus


Alignment Length:704 Identity:174/704 - (24%)
Similarity:302/704 - (42%) Gaps:129/704 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  1147 TDAKQSVVEL-----------------QIEVL-DVNDNAPEFTQKKYSTVIPENAQIDSFVLQLE 1193
            |:.|.:|:.|                 |..|| :...:.|::..|.:|                 
  Rat    33 TEPKDNVIHLLGRRSHFQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHS----------------- 80

  Fly  1194 AVDADEGLGGEVRYELVNEGEANGLFKIDTKSGLISTRRNLTGKGRAHPYVLIVRAQDNGNQMPK 1258
              |.|:| .|.|:|.|..:| |..:|.||..:|.|...|:|..:.:.. |.|..:|.|...:.|.
  Rat    81 --DLDKG-EGTVKYTLSGDG-AGTVFTIDETTGDIHAIRSLDREEKPF-YTLRAQAVDIETRKPL 140

  Fly  1259 QPTLSTDTDVRIYIGDVSANDGVPYFL-SPRVGQMANVTENAVTGAPVFQVIASDPDDES-TPSG 1321
            :|    :::..|.:.|:  ||..|.|| .|.|   |:|.|.:..||.|.||.|:|.||.: ..|.
  Rat   141 EP----ESEFIIKVQDI--NDNEPKFLDGPYV---ASVPEMSPVGAYVLQVKATDADDPTYGNSA 196

  Fly  1322 TITYRILPDTPDAEAFVIDAHSGLI-TTRQSMDRETKDMYRILLEVSDNGQP--KQSATRILQIA 1383
            .:.|.||...|   .|.||..:|:| |...:||||.|:.|::|::..|.|..  ..:.|.|:.|.
  Rat   197 RVVYSILQGQP---YFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNIT 258

  Fly  1384 ILDVDDHEPRFAREADAGPLSMSVREEEPAGTIVGNFSALDEDLGENAAIDYVIIDGNNEQLFTI 1448
            :.||:|:.|||.:..    ..:.|.|..|.|:.:|...|:|.|.|:||.|:|.|:.|:...||.|
  Rat   259 LTDVNDNPPRFPKSI----FHLKVPESSPVGSAIGRIRAVDPDFGKNAEIEYNIVPGDGGNLFDI 319

  Fly  1449 ERNNESL-AILKTKKPIDREQVESFTLTIKCLKLGEPGYKFIGDPYDRQDLSHLRINVRVLDIDD 1512
            ..:.::. .|:|.|||:|.|..:::|..::...|..........|:  :|.:.::|:  |||:|:
  Rat   320 VTDEDTQEGIIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPF--KDTATVKIS--VLDVDE 380

  Fly  1513 NLPKFEQPDPTVGIRINVPIDTVVTTLKASDADAEAPPVGLSIENVTFVPQFYKRSRSLAVGNLH 1577
            . |.|.:|..|:.:..:.|:.|::..:.|.|.|..:..|...|:        :|....       
  Rat   381 P-PVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRYFID--------WKSDGD------- 429

  Fly  1578 NLFTLNNRTGELRTGGSFADYVDGYFLMRVMANNSVQPKRQAHSNLKVFVIRDKSLLKFVFARPP 1642
            :.||::...|.:.|...........:...::|:....|...:..|:.:.|:   .:.:|    ||
  Rat   430 SYFTIDGTEGTIATNELLDRENTAQYNFSIIASKVSNPSLTSKVNILINVL---DVNEF----PP 487

  Fly  1643 -------NEIQHNIRPFQ-----EQLQKKLKPLGLELHV-LDTQVFTRPDMSL-DFTATSSCFQM 1693
                   ..:..|.:|.|     ..:.:.|.|.|.:... |..:...:|:.:: ||...::..:.
  Rat   488 EISVPYETAVCENAKPGQIIQIVGAVDRDLSPAGQQFSFRLAPEAVIKPNFTVHDFRNNTAGIET 552

  Fly  1694 FKNGAALSFNEM--------------QKLMNSQQLRQELIDIYAAYGVSEVESCSVRRTHAAAIF 1744
            .:||.:....|:              |...|:..:|     :........:.||:|.     |||
  Rat   553 RRNGYSRRQQELYFLPIVIEDSSYPVQSSTNTMTIR-----VCRCDSDGTILSCNVE-----AIF 607

  Fly  1745 AGMLTSAGAWLVFLAALIGLAALVSLCTACCLKKKLKRHSKRSLQASLRTPTEH 1798
            ..:..|.||.:..|..::.|.|:|.|..|  |:::.|:.:..:.:..:|....|
  Rat   608 LPVGLSTGALIAILLCIVILLAIVVLYVA--LRRQKKKDTLMTSKEDIRDNVIH 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad74ANP_648973.1 Cadherin_repeat 33..124 CDD:206637
Cadherin_repeat 132..240 CDD:206637
Cadherin_repeat 249..361 CDD:206637
Cadherin_repeat 487..581 CDD:206637
Cadherin_repeat 589..686 CDD:206637
Cadherin_repeat 713..810 CDD:206637
Cadherin_repeat 819..936 CDD:206637
Cadherin_repeat 953..1049 CDD:206637
Cadherin_repeat 1057..1166 CDD:206637 7/36 (19%)
Cadherin_repeat 1175..1279 CDD:206637 25/103 (24%)
Cadherin_repeat 1293..1390 CDD:206637 37/100 (37%)
Cadherin_repeat 1402..1513 CDD:206637 34/111 (31%)
Cadherin_repeat 1523..1628 CDD:206637 16/104 (15%)
Cdh12NP_001414404.1 None
Blue background indicates that the domain is not in the aligned region.

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