DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tap and hlh-4

DIOPT Version :10

Sequence 1:NP_524124.1 Gene:tap / 39935 FlyBaseID:FBgn0015550 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_001379052.1 Gene:hlh-4 / 176372 WormBaseID:WBGene00001951 Length:205 Species:Caenorhabditis elegans


Alignment Length:209 Identity:52/209 - (24%)
Similarity:80/209 - (38%) Gaps:64/209 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 KANDRERNRMHNLNDALEKLRVTLPSLPEETK-LTKIEILRFAHNYIFALEQVLESGGSINLDLE 221
            |.|.|||.|:|.:|.|...|:..||||.:.|| ::|:.||..|..||..|.::::|..::.   :
 Worm     7 KRNARERTRVHTVNQAFLVLKQHLPSLRQFTKRVSKLRILNAAITYIDTLLKLIQSSEAVP---Q 68

  Fly   222 KLQNFTL---------SGERITKELFDALFVNP--------------QPYPLFGRMFP------- 256
            .:.:.||         :..:|:|.  |.:...|              .|.|:.....|       
 Worm    69 SVISATLGPIVPTPVRAVHKISKP--DTVISQPIRPLAPVLPRHETYLPAPIAATCAPDHSLVDY 131

  Fly   257 ---YGQGMAPLAQHQTAPASHAEQP--PAMGGFQHGMDYPQQPPGFDFTGSMRFYHQQQQQPHQP 316
               :...:||....| .|:..:.||  |.|...   :|||..           ||        ||
 Worm   132 RSTFASSLAPPVPMQ-MPSVFSPQPTFPYMKSL---LDYPTY-----------FY--------QP 173

  Fly   317 HHLQPNPQQESSPQ 330
            ....|.|...::||
 Worm   174 STAPPPPPAPTAPQ 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tapNP_524124.1 bHLH_TS_NGN 155..211 CDD:381434 23/53 (43%)
hlh-4NP_001379052.1 bHLH_TS_ASCL 5..60 CDD:381424 23/52 (44%)

Return to query results.
Submit another query.