DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv2 and Pkd1l2

DIOPT Version :10

Sequence 1:NP_648970.2 Gene:brv2 / 39932 FlyBaseID:FBgn0036712 Length:736 Species:Drosophila melanogaster
Sequence 2:XP_038954049.1 Gene:Pkd1l2 / 691069 RGDID:1588631 Length:2492 Species:Rattus norvegicus


Alignment Length:697 Identity:160/697 - (22%)
Similarity:275/697 - (39%) Gaps:125/697 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 VMVCFVLVSIFSGFMHEPQRFKTM--------------LVTIVLVFFFQYLILEPIRFFIQSIDY 71
            |:|.::||:..||.    ..|.||              |:::.:.|.....|.:|::....::.:
  Rat  1849 VLVGWLLVATTSGV----AAFFTMLYGLHYGRASSLKWLISMAVSFVESVFITQPLKVLGFAVFF 1909

  Fly    72 A-TWPQEDP-------PYRAEEGGPTMDHIGYLKIRLRSLRS------ELLISEGHTNEMLNQKY 122
            | ...:||.       |.|....||   |: ..:.|.||.:.      ...|.:..|..:..||.
  Rat  1910 ALVLKREDDEETLPLLPGRLSSPGP---HV-LSQSRRRSSKDAYRPPPAAAIEKMKTARLKEQKA 1970

  Fly   123 KHIAGDLLLYGSYFIALMLMVVLQEDHTNYYNTNNMQRLFWDNTSVTFGLSQVYFIYQVHSYMKI 187
            ..:..::|.|..:...|:|:...|.|.:.|:...:::|.|      |.|.|.|........:...
  Rat  1971 FALIREILAYLGFLWMLLLVAYGQRDPSAYHFNRHLERSF------TQGFSAVLDFRGFLEWANT 2029

  Fly   188 TLVEAFYAQKTNGYEGWWAMEQWQKIGVVRLRQMRPVD---------------CHIGLGKPEWDK 237
            |||:..|..    :.|:......:.:|...|||:|..:               |.........|.
  Rat  2030 TLVKNLYGH----HPGFVTDGNSKLVGSAHLRQVRVRESSCAVAWQLRGSFDGCRAPYSLDAEDL 2090

  Fly   238 KTYAPEWRLPYHRMHYTEKFWRIYDPFVPAEFE-PSFLNGLLLNYDHYGYLLNYPEVAGYVVLMM 301
            ..|...|....|  :.::.|.:::      ::: .|...|    |..:|.|..|.. .||||.:.
  Rat  2091 ADYGEGWNASAH--NSSDGFPKVW------QYQSQSRRRG----YPTWGKLAVYGG-GGYVVPLG 2142

  Fly   302 STKINCLKQIEYLRDYSWLDKNTSALFIDLTMYNADANLFTLITLRVENSPFGIQLPRVHVDSVS 366
            :...:..:.:::|.|..|||..|.|||::.|:|||:.||...:||.:|.|..|.....|.:.|:.
  Rat  2143 TDHQSASRILQHLFDNRWLDALTRALFVEFTVYNANVNLLCCVTLTLETSGLGTFFSHVTLQSLR 2207

  Fly   367 MLGNVETRSN----SEL---LILFVYTV----LVILFARGVFTKIWHHPAAAHEAWTMVDLAIYI 420
            :....:....    :||   |.||.|.|    |:.....|.|.          ..|.:::|||.:
  Rat  2208 LYPFTDGWHPFVVVAELVYFLFLFYYMVEQGKLMRKQKWGYFC----------SKWNLLELAIIL 2262

  Fly   421 LNVFLTVLAIMRDIETDALLQIIETATKGQYLDFQRPLRLHQMLFIVKGFLVCITTLRLWKVLQF 485
            .:....|:.:.|.:..|..||... ..:|:.:.|.........|..:..|||.::|::||.:|:.
  Rat  2263 ASWSALVVFVKRAVLADRDLQHYR-KNRGEGVSFSETAAADAALGYIIAFLVLLSTVKLWHLLRL 2326

  Fly   486 ASVFQHFTQTLFSAWRAVASLGVIILVVLMAIGITLAVPNGNNAVVFSHMVQSVVTCMWYSMG-F 549
            .......|..|.|||..::....:||::|:|..|...:..|.....:..:..:..|.:...:| |
  Rat  2327 NPKMNMITSALRSAWGDISGFVTVILIMLLAYSIASHLIFGWKLRSYKTLFDAAETMISLQLGIF 2391

  Fly   550 NG----DIHPADFFHGGRILGILLYLALVFLLAIILMNVFASVIYDYFNETSRI--LKEHSNRSS 608
            |.    |..|        :||.||..:.:..:..:::|:|.|||...|:|..:.  |.|....:.
  Rat  2392 NYEEVLDYSP--------VLGSLLIGSCIVFMTFVVLNLFISVILVAFSEEQKSDQLSEEGEIAD 2448

  Fly   609 ITFLEFLHVEYADLFGDAFRCLR-KTYESRGHTVAENVELELNRREL 654
            :..::.|     ...|  .||.| :|:.|     :|..||..|...|
  Rat  2449 LLLMKIL-----SFLG--IRCKREETWSS-----SEQPELSPNTLSL 2483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv2NP_648970.2 Polycystin_dom 171..368 CDD:466668 51/212 (24%)
PKD_channel 369..596 CDD:462341 56/242 (23%)
Pkd1l2XP_038954049.1 CLECT 70..186 CDD:153057
Gal_Rha_Lectin_PKD1L2 189..285 CDD:438688
REJ <697..894 CDD:366875
GPS 1308..1347 CDD:460350
PLAT_polycystin 1418..1537 CDD:238850
Polycystin_dom 2013..2209 CDD:466668 51/212 (24%)
PKD_channel 2211..2433 CDD:462341 56/240 (23%)
Blue background indicates that the domain is not in the aligned region.

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