DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brv2 and pkd1l3

DIOPT Version :10

Sequence 1:NP_648970.2 Gene:brv2 / 39932 FlyBaseID:FBgn0036712 Length:736 Species:Drosophila melanogaster
Sequence 2:XP_021333660.2 Gene:pkd1l3 / 565944 ZFINID:ZDB-GENE-060810-132 Length:1083 Species:Danio rerio


Alignment Length:484 Identity:93/484 - (19%)
Similarity:158/484 - (32%) Gaps:176/484 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SSISRKDLTCFGVTTCVVMVCFVLVSIF-----SGFMHE---------PQR------------FK 42
            :|..:.::..||             :||     |||..|         |:|            ..
Zfish   715 NSAKKNEIASFG-------------NIFQTRTSSGFRDEHIWVSIVDPPRRSPFTRVQRVSCCMS 766

  Fly    43 TMLVTIVLVFFFQYLILE---PIRFFIQSIDYATWPQEDPPYRAEEGGPTMDHIGYLKIRL-RSL 103
            .:|.|:.:...|..|..:   |:...|.|.. .||.|.   ..|.|.|..|..|..|.|.: |.:
Zfish   767 LLLCTMAINIMFWNLPTDAESPVILKIGSFQ-LTWQQF---MVAVESGLFMFPINILIITIFRHI 827

  Fly   104 RSELLISEGHTNEMLNQKYKHIAGDLLLYGSYFIALMLMVVLQEDHTNYYNTNNMQRLFWDNTSV 168
            :..:|:::|.|:.  ::|....|           ::.:..::||                     
Zfish   828 KPRILLNKGKTDS--SKKTTPAA-----------SVSMNTIIQE--------------------- 858

  Fly   169 TFGLSQVYFIYQVHSYMKITLVEAFYAQKTNGYEGWWAMEQWQKIG-VVRLRQMRPVDCHIGLGK 232
            |.||     :..:....|..|.......:|:| :.:||::   |:. |:.:.|..      .:|.
Zfish   859 TVGL-----LNYLSKSPKNNLPAKEIQPETSG-DLFWALD---KVNHVLEIMQAE------SIGD 908

  Fly   233 PEWDKKTYAPEWRLPYHRMHYTEKFWRIYDPFVPAEFEPSFLNGLLLNYDHYGYLLN--YPEVAG 295
            |.|            ::..|:             ..:..|.:|.||.:....|..||  ..:..|
Zfish   909 PHW------------FYCSHF-------------VLYSLSHINNLLEHVGEKGCFLNEELRQARG 948

  Fly   296 YV-VLMMSTKINCLK---------QIEYLRDYSWLDKNTSALFID---LTMYNADANLFTLITLR 347
            .| .|:...:|...|         |::..:...||.  ...|||.   |.:.:..:..|||:   
Zfish   949 IVNALLKKAEIVSQKHTSQSQPVVQVQKKKQGWWLP--WWFLFIGWFLLFVMSGISTFFTLL--- 1008

  Fly   348 VENSPFGIQLPRVHVDSVSMLGNVETRSNSELLILFVYTVLVILFARGVFTKIWHHPAAAHEAWT 412
                 :|.|..|     .|.:..|.|.|.|.:..:|:...|.::|....|..|            
Zfish  1009 -----YGFQYGR-----ESSIQWVVTLSLSLVQSIFIMQPLKVIFVAIFFAMI------------ 1051

  Fly   413 MVDLAIYILNVFLTVLAIMRDIETDALLQ 441
                        |..:|:..:.|.:.|||
Zfish  1052 ------------LRPVAVENNEEVELLLQ 1068

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv2NP_648970.2 Polycystin_dom 171..368 CDD:466668 41/212 (19%)
PKD_channel 369..596 CDD:462341 15/73 (21%)
pkd1l3XP_021333660.2 CLECT 46..154 CDD:214480
GPS 493..531 CDD:460350
PLAT_polycystin 602..717 CDD:238850 0/1 (0%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.