DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv2 and Pkd2l2

DIOPT Version :9

Sequence 1:NP_648970.2 Gene:brv2 / 39932 FlyBaseID:FBgn0036712 Length:736 Species:Drosophila melanogaster
Sequence 2:NP_001099626.1 Gene:Pkd2l2 / 291683 RGDID:1310272 Length:621 Species:Rattus norvegicus


Alignment Length:707 Identity:142/707 - (20%)
Similarity:255/707 - (36%) Gaps:184/707 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 ATWPQEDPPYRAEEGGPTMDHIGYLKIRLRSLRSELLISEGHTNEMLNQKYKHIAGDLLLYGSYF 136
            |||        ...||.:...:.|.:             |...|..|.        :|||   ||
  Rat     4 ATW--------WHRGGTSKHDLHYRR-------------EAEVNTTLE--------ELLL---YF 36

  Fly   137 IALMLMVVLQEDHTN---YYNTNNMQRLFWDNTSV----TFGLSQVYFIYQVHSYMKITLVEAFY 194
            |.|:.:.:|.....|   ||....|..||.| ||:    ......:..|.:...:|:..|||..|
  Rat    37 IFLINLCILTFGTVNPHMYYLNKVMSSLFVD-TSLPDDERSSFRSIRSITEFWKFMEGPLVEGLY 100

  Fly   195 AQKTNGYEGWWAMEQWQKI-------------GVVRLRQMRPVD--CHI-----GLGKPEWDKKT 239
                  ::.|:...|...:             ||.|:||:|..:  |.:     .|....::|.|
  Rat   101 ------WDSWYGNTQLDSVKNSSLIYYENILLGVPRVRQLRVRNSTCQVYPAFQSLASDCYNKYT 159

  Fly   240 ------------YAPEWRLPYHRMHYTEKFWRIYDPFVPAEFEPSFLNGLLLNYDHYGYLLNYPE 292
                        :.||||   |....:...|                        |:|::..|.:
  Rat   160 AENEDFSDFGLKHDPEWR---HSAPSSTAPW------------------------HWGFVGVYRD 197

  Fly   293 VAGYVVLMMSTKINCLKQIEYLRDYSWLDKNTSALFIDLTMYNADANLFTLITLRVENSPFGIQL 357
             .||:|.:..:|.....::..||..:|:.:.|.|:|||.::|||:.|||.:|.|..|....|..|
  Rat   198 -GGYMVTLSKSKSETKAKLADLRQNNWIGRGTRAVFIDFSLYNANVNLFCIIRLLAEFPATGGIL 261

  Fly   358 PRVHVDSVSMLGNVETRSNSELLILFVYTVLVILFARGVFTKIWHHPAA-AHEAWTMVDLAIYIL 421
            ......||.::..|....:.......::.:.:::|......|:....:| ....|..::|.:.:|
  Rat   262 TSWQFYSVKLIRYVSYYDHFIASCEIIFCIFLLVFITQELRKLNEFKSAYFRSVWNWIELLLLVL 326

  Fly   422 -----------NV--FLTVLAIMRDIETDALLQIIETATKGQYLDFQRPLRLHQMLFIVKGFLVC 473
                       ||  ||.:..::|..|:              |.||......|    |....::.
  Rat   327 CFLAVSFYAYCNVQCFLLLGQLLRSTES--------------YPDFYFLAYWH----IYYNNIIA 373

  Fly   474 ITT----LRLWKVLQFASVFQHFTQTLFSAWRAVASLGVIILVVLMAIGITLAVPNGNNAVVFSH 534
            ||.    ::::|.:.|.......:.||....:.:....::..::..|......:..|:....||.
  Rat   374 ITIFFAWIKIFKFISFNETMSQLSSTLSRCMKDIVGFAIMFFIIFFAYAQLAFLVFGSQVDDFST 438

  Fly   535 MVQSVVTCMWYSMGFNGDIHPADFFHGGRILGILLYLALVFLLAIILMNVFASVIYDYFNET--- 596
            ...|:.......:   ||.:.|.......|||.:.::..:|.:..:|:|:|.::|.|.::|.   
  Rat   439 FQNSIFAQFRIVL---GDFNFAGIQQANWILGPIYFITFIFFVFFVLLNMFLAIINDTYSEVKAD 500

  Fly   597 -----------SRILKEHSNRSSITFLEFLHVEYADLFGDAFRCLRKTYESRGHTVAENVELELN 650
                       ..|:|    :|....||.|.             |||...:....:..:|:|...
  Rat   501 YSIGRRPDFELGSIIK----KSCFNILEKLR-------------LRKAQNNEDKKMKTSVDLAQA 548

  Fly   651 RRELIKFKRDLIKSPQELKRALLTEEQR------SADYRLRGEKLFKLMAILNLQVE 701
            |:|  .|....|:..:::||.....|::      ..||:...::.|:.:.:..:::|
  Rat   549 RKE--GFDESEIQEARQMKRWKERLEKKYYSTEIQDDYQPVTQQEFRELFLYAVELE 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv2NP_648970.2 PKD_channel 169..596 CDD:285288 93/476 (20%)
Pkd2l2NP_001099626.1 PKD_channel 76..497 CDD:285288 93/475 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3599
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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