DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv2 and pkd-2

DIOPT Version :9

Sequence 1:NP_648970.2 Gene:brv2 / 39932 FlyBaseID:FBgn0036712 Length:736 Species:Drosophila melanogaster
Sequence 2:NP_502838.3 Gene:pkd-2 / 178424 WormBaseID:WBGene00004035 Length:716 Species:Caenorhabditis elegans


Alignment Length:749 Identity:153/749 - (20%)
Similarity:268/749 - (35%) Gaps:209/749 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 WPQEDPPYRAEEGGPTMDH--------------------IGYLKIRLRSLRSELLISEGHTNEML 118
            |.....|..|.|.||:.||                    |.:         |:.|::.||  |..
 Worm    10 WANPPQPVAAAEHGPSFDHSMVSEEYEHDKKKNPAQKEGISF---------SQALLASGH--EKS 63

  Fly   119 NQKYKHIAGDLLLYGSYFIALMLMVVL---QEDHTNYYNTNNMQRLFWDNTSVT----FG----- 171
            :.|.|..|...:..|.|.:.|:::|.:   |....:||.:..|..||..:|..:    ||     
 Worm    64 DGKIKLTARSFMEVGGYAVFLIVLVYVAFAQNSIQSYYYSKVMSDLFVASTGASGAPAFGSCTSM 128

  Fly   172 ------LSQVYFIYQVHSYMKITLVEAFYAQKTNG---------YEGWWAMEQWQKIGVVRLRQM 221
                  ||||             |:...|..:|:.         ||.       :.:|..|:|.:
 Worm   129 DNIWDWLSQV-------------LIPGIYWTETSNSTDNENMIYYEN-------RLLGEPRIRML 173

  Fly   222 RPVD--CHIGLGKPEWDKKTYAPEWRLPYHRMHYTEKFW-------RIYDPFVPA---EFEPSFL 274
            :..:  |.:........|:.:|          :|.||..       ...|.|:.|   |.|....
 Worm   174 KVTNDSCTVMKSFQREIKECFA----------NYEEKLEDKTMVGDGSVDAFIYATAKELENLKT 228

  Fly   275 NGLLLNYDHYGYLLNYPEVAGYVVLMMSTKINCLKQIEYLRDYSWLDKNTSALFIDLTMYNADAN 339
            .|.:.:|...|::...| |||      ||:..  ..|..|:...|:|:.:.|:.:|..:|||:.|
 Worm   229 VGTIASYGGGGFVQRLP-VAG------STEAQ--SAIATLKANRWIDRGSRAIIVDFALYNANIN 284

  Fly   340 LFTLITLRVENSPFG--IQLPRVHVDSVSMLGNVETRSNSELLI-------LFVYTVLVILFARG 395
            ||.::.|..|....|  |..|::....   |...:|...:.::|       ..:|.:...|||.|
 Worm   285 LFCVVKLLFELPASGGVITTPKLMTYD---LLTYQTSGGTRMMIFEGIFCGFILYFIFEELFAIG 346

  Fly   396 VFTKIWHHPAAAHEAWTMVDLAIYILNVFLTVLAIMR-DIETDALLQIIE-----------TATK 448
                 .|......:.|.:||:.:...:|...:|::.| ....:.:..:||           |:::
 Worm   347 -----RHRLHYLTQFWNLVDVVLLGFSVATIILSVNRTKTGVNRVNSVIENGLTNAPFDDVTSSE 406

  Fly   449 GQYLDFQRPLRLHQMLFIVKGFLVCITTLRLWKVLQFASVFQHFTQTLFSAWRAVASLGVIILVV 513
            ..||:             :|..:|.:..::::|.:.........:.||..:.:.:....|:..|.
 Worm   407 NSYLN-------------IKACVVFVAWVKVFKFISVNKTMSQLSSTLTRSAKDIGGFAVMFAVF 458

  Fly   514 LMAIGITLAVPNGNNAVVFSHMVQSVVTCMWYSMGFNGDIHPADFFHGGRILGILLYLALVFLLA 578
            ..|......:..|.....:|::..|....:...:   ||.:.:......|..|...::|.||.::
 Worm   459 FFAFAQFGYLCFGTQIADYSNLYNSAFALLRLIL---GDFNFSALESCNRFFGPAFFIAYVFFVS 520

  Fly   579 IILMNVFASVIYDYFNETSRILKEHSNRSSITFLEFLHVEYADLFGDAFRCLRK----------- 632
            .||:|:|.::|.|.:.|....|....:...|          .|.|.:..|.|.|           
 Worm   521 FILLNMFLAIINDSYVEVKAELARKKDGEGI----------LDWFMNKVRGLTKRGKRPDAPGED 575

  Fly   633 -TYESRGHTV--AENVELELNRRELIKFKRDLIKS-----PQELKR------ALLTEEQRS---- 679
             |||.....:  |...|.::|.    .|.|..:.|     |:::..      |.:||::|:    
 Worm   576 ATYEDYKLMLYRAGYAEKDINE----AFTRFNVTSMTEHVPEKVAEDIADEVARMTEQKRNYMEN 636

  Fly   680 -ADYRLRGEKLFKLMAILNLQVEILERMVLGDKD 712
             .||           |.||.:|:.::..|....|
 Worm   637 HRDY-----------ANLNRRVDQMQESVFSIVD 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv2NP_648970.2 PKD_channel 169..596 CDD:285288 95/483 (20%)
pkd-2NP_502838.3 PKD_channel 119..538 CDD:285288 95/481 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3599
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46093
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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