DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv2 and lov-1

DIOPT Version :9

Sequence 1:NP_648970.2 Gene:brv2 / 39932 FlyBaseID:FBgn0036712 Length:736 Species:Drosophila melanogaster
Sequence 2:NP_496184.3 Gene:lov-1 / 174576 WormBaseID:WBGene00003058 Length:3284 Species:Caenorhabditis elegans


Alignment Length:764 Identity:138/764 - (18%)
Similarity:253/764 - (33%) Gaps:205/764 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 RFKTMLVTIVLVF------FFQYLIL-------------------EPIRFFIQSIDYATWPQEDP 79
            ||...|:...:||      .:.:|||                   :|...|:::           
 Worm  2587 RFLISLILWAVVFEPIKGLIWAFLILKTRKSHKIINKLEEALLRAKPAETFLRN----------- 2640

  Fly    80 PYRAEEGGPTMDHIGYLKIR---LRSLRSELLISEGHTNEMLNQKYKHIAGDLLLYGSYFIALML 141
            ||...|.|...:.....|:|   .|.:|.|             |.:..|...|..:.|.:|.:||
 Worm  2641 PYGKIEKGLGTEIADVTKLRDTENRKMRDE-------------QLFITIRDMLCFFASLYIMVML 2692

  Fly   142 MVVLQEDHTNYYN------TNNMQRLFWDNTSVTFGLSQVYFIYQVHSYMKITLVEAFYAQKTNG 200
            ....::.|..:|.      .|..|:.:.|||.::...:..::.:...|.....|...:......|
 Worm  2693 TYYCKDRHGYWYQLEMSTILNINQKNYGDNTFMSIQHADDFWDWARESLATALLASWYDGNPAYG 2757

  Fly   201 YEGWWAMEQWQKIGVVRLRQMRPV----------------DC---------------HIGLGKPE 234
            ...:...:..:.:|:..:||:|..                ||               ..|..:.|
 Worm  2758 MRAYMNDKVSRSMGIGTIRQVRTKKSAECTMFKQFQGYINDCGEELTSKNEEKTLYMQAGWTELE 2822

  Fly   235 WDKKTYAPEWRLPYHRMHYTEKFWRIYDPFVPAEFEPSFLNGLLLNYDHYGYLLNYPEVAGYVVL 299
            .:..|.|.:        .||.|        ...|.....::|||.:|..          .||.:.
 Worm  2823 SENGTDASD--------EYTYK--------TSEELSTETVSGLLYSYSG----------GGYTIS 2861

  Fly   300 MMSTKINCLKQIEYLRDYSWLDKNTSALFIDLTMYNADANLFTLITLRVENSPFGIQLPRVHVDS 364
            |..|:...:.....|....|:|.:|.|:.|:.:.|||..|.|:::.|.||....||.||...|:|
 Worm  2862 MSGTQAEIITLFNKLDSERWIDDHTRAVIIEFSAYNAQINYFSVVQLLVEIPKSGIYLPNSWVES 2926

  Fly   365 VSMLGNVETRSNSELLILFVYTVLVILFARGVFTK-------------------------IWHHP 404
            |.::.:    ..|:..::..|.:|.|.|:..:|.|                         ::...
 Worm  2927 VRLIKS----EGSDGTVVKYYEMLYIFFSVLIFVKEIVFYLYGRYKVITTMKPTRNPFKIVYQLA 2987

  Fly   405 AAAHEAWTMVDLAIYILNVFLTVLAIMRDIETDALLQIIETATKGQYLDFQRPLRLHQMLFIVKG 469
            ......|..:||.:..|.|...:...:|...|:..::.........|::.........:......
 Worm  2988 LGNFSPWNFMDLIVGALAVASVLAYTIRQRTTNRAMEDFNANNGNSYINLTEQRNWEIVFSYCLA 3052

  Fly   470 FLVCITTLRLWKVLQFASVFQHFTQTLFSAWRAVASLGVIILVVLMAIGITLAVPNGNNAVVFSH 534
            ..|..|:.::.::|:|.........||.:|..|:.|.|:..|...|.....|....||....:..
 Worm  3053 GAVFFTSCKMIRILRFNRRIGVLAATLDNALGAIVSFGIAFLFFSMTFNSVLYAVLGNKMGGYRS 3117

  Fly   535 MVQSVVTCMWYSMGFNG-----DIHPADFFHGGRILGILLYLALVFLLAIILMNVFASVIYDYFN 594
            ::.:..|.:   .|..|     .|.|...|   ..:.|:||:   ...:.:::.::.::|...|.
 Worm  3118 LMATFQTAL---AGMLGKLDVTSIQPISQF---AFVVIMLYM---IAGSKLVLQLYVTIIMFEFE 3173

  Fly   595 ETSRILKEHSNRSSITFLEFLHVEYADLFGDAFRCLRKTYESRGHTVAENVELELNRRELIKFKR 659
            |    ::..|.:.:..:....|::|                                    |.||
 Worm  3174 E----IRNDSEKQTNDYEIIDHIKY------------------------------------KTKR 3198

  Fly   660 DL-IKSPQELKRALLTEEQRSADYRLRGEKLFKLMAILNLQVEILERMV 707
            .| :..|::.....:.:.|:  |:||    ....:|.:||......||:
 Worm  3199 RLGLLEPKDFAPVSIADTQK--DFRL----FHSAVAKVNLLHHRATRML 3241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv2NP_648970.2 PKD_channel 169..596 CDD:285288 87/487 (18%)
lov-1NP_496184.3 GPS 2177..2226 CDD:197639
PLAT_polycystin 2288..2413 CDD:238850
PKD_channel 2723..3175 CDD:285288 89/494 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158430
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3599
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.750

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