DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv2 and pkd1l3

DIOPT Version :9

Sequence 1:NP_648970.2 Gene:brv2 / 39932 FlyBaseID:FBgn0036712 Length:736 Species:Drosophila melanogaster
Sequence 2:XP_017949004.2 Gene:pkd1l3 / 101734692 -ID:- Length:1080 Species:Xenopus tropicalis


Alignment Length:670 Identity:151/670 - (22%)
Similarity:264/670 - (39%) Gaps:148/670 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VC-FVLVSI--FSGFM-------HEPQRFKTMLVTIVLVFFFQYLILEPIRFFIQSID------- 70
            || |||::|  ||.:.       ...|:..:.|::::|..|....:|.|::.|||::.       
 Frog   471 VCWFVLLAISSFSAYYMTLVSLDMTRQKATSWLISMLLSLFHSLFLLPPVKAFIQTVFMFRVLRR 535

  Fly    71 ------------------YATWPQ---------EDPPYRAEEGGPTMDHIGYLKIRLRSLRSELL 108
                              :|..|.         :||.|.:    |....|..||           
 Frog   536 STMDDAAEEQQLHGILSLFANCPDWELSGCRDPQDPIYCS----PVNKAITSLK----------- 585

  Fly   109 ISEGHTNEMLNQKYKHIAGDLLLYGSYFIALMLMVVLQEDHTNYYNTNNMQRLFWDNTSVTFGLS 173
                 ..:::.::...:..::.::..:.|..|:|....:....|    |:.....::.|.||  |
 Frog   586 -----RQKLIEKRLYRLVLEIAVHVVFLIMTMIMAYADKSPNEY----NLNIAVSNSFSSTF--S 639

  Fly   174 QVYFIYQVHSYMKITLVEAFYAQKTNGYEGWWAMEQWQKIGVVRLRQMRPVDCHIGLGKPEWDKK 238
            |:..|...:|:...||:...|:|    |.|:........:|..|:||:|.......:|    |..
 Frog   640 QIGNIEDFYSWTSSTLLPNLYSQ----YTGFITDGNCFLLGSPRIRQLRRAQSQYSIG----DTG 696

  Fly   239 TYAPEWRLPYHRMHYTEKFWRIYDPFVPAEFEPSFLNGLLLNYDHYGYLLNYPEVAGYVVLMMST 303
            .|..|| ||..|....:|.|:.|     .|.|       |:.|..:|. |.:....|:|..:.:.
 Frog   697 HYKAEW-LPLGRNDTPDKEWKYY-----TEKE-------LVGYPIWGQ-LGWYSGGGFVAELGNN 747

  Fly   304 KINCLKQIEYLRDYSWLDKNTSALFIDLTMYNADANLFTLITLRVENSPFGIQLPRVHVDSVSML 368
            .||....:.:|:...|||..|.|:|::..:|||:.|||.|.|..:|.|..|..|..|.:....:.
 Frog   748 IINASSILMWLQTNQWLDTYTKAVFVEFNVYNANVNLFCLATFIMETSAIGNFLTSVDLQIRKLS 812

  Fly   369 GNVETRSNSELL--ILFVYTVLVILFARGVFTKIWHHPAAAHEAWT-------MVDLAIYILNVF 424
            .:.....:|:.:  |:|:..||..:..:|:..|        .:.|:       ::||:|.::::.
 Frog   813 WSTTDIFSSQFISYIIFLIIVLYNIIQQGLLIK--------KQKWSYLTNIKNLLDLSIIMISIC 869

  Fly   425 LTVLAI------MRDI-----ETDALLQIIETATKGQYLDFQRPLRLHQMLFIVKGFLVCITTLR 478
            .|.|.|      .|||     :....:...|||. |:        .:|....   .|||.:.|.:
 Frog   870 NTGLYIKLALLCQRDINRYQQDRTRFVSFYETAI-GE--------SIHGYSI---AFLVSLMTAK 922

  Fly   479 LWKVLQFASVFQHFTQTLFSAWRAVASLGVIILVVLMAIGITLAVPNGNNAVVFSHMVQSVVTCM 543
            ||.:|...........||..||..:....:.|:::::|..||..|..|.....:.....:.||..
 Frog   923 LWSLLSLNPNLHLIMVTLRKAWDEIIYFLIAIIIIIVAYSITCNVLYGWKIYSYRTFFDTAVTIF 987

  Fly   544 WYSMG-FNG----DIHPADFFHGGRILGILLYLALVFLLAIILMNVFASVIYDYFNETSRILKEH 603
            ...:| ||.    |:.|        ::|.||....|..|..:|:|:|.|.|...|::..:....|
 Frog   988 SLLIGIFNYDQVLDLSP--------VIGSLLITTYVIFLVFVLVNIFLSAILAVFSKERQCPTPH 1044

  Fly   604 SNRSSITFLEFLHVEYADLF 623
            .::..:   :.|.::.:.||
 Frog  1045 KDKDVV---DLLMLKLSGLF 1061

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv2NP_648970.2 PKD_channel 169..596 CDD:285288 115/451 (25%)
pkd1l3XP_017949004.2 PLAT 66..183 CDD:412108
PKD_channel 638..1035 CDD:400395 113/448 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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