DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv2 and pkd1l2b

DIOPT Version :9

Sequence 1:NP_648970.2 Gene:brv2 / 39932 FlyBaseID:FBgn0036712 Length:736 Species:Drosophila melanogaster
Sequence 2:XP_021333711.1 Gene:pkd1l2b / 100537993 ZFINID:ZDB-GENE-141222-87 Length:1901 Species:Danio rerio


Alignment Length:664 Identity:135/664 - (20%)
Similarity:269/664 - (40%) Gaps:119/664 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LVSIFSGFMH-----EPQRFKTMLVTIVLVFFFQYLILEPIRFFIQSID---------------- 70
            ::|..:||..     ||       |.:|.:..|..|:::.:....:.:|                
Zfish  1306 IISNVTGFTQSLCFTEP-------VKVVFIGIFFALVMKKVEAEDEEVDTLQKKTTAGSDGLSEV 1363

  Fly    71 -YA------TWPQEDPPYRAEEGGPTMDHIGYLKIRLRSLRSELLISEGHTNEMLNQKYKHIAGD 128
             :|      ::.|..||...|            |:|              .|.:..||.:.:..:
Zfish  1364 CFAQRDCTQSYYQPPPPGDIE------------KLR--------------RNMIKQQKAQALVME 1402

  Fly   129 LLLYGSYFIALMLMVVLQEDHTNYYNTNNMQRLFWDNTSVTFGLSQVYFIYQVHSYMKITLVEAF 193
            :|::..:...|:|:...|:|...:|.|.::|:.|      :.|:|.......|..:....|::..
Zfish  1403 VLIFLGFLSMLLLVAYGQQDPNAFYLTQHIQQSF------SKGISDSMKTNDVFVWANTVLLKNL 1461

  Fly   194 YAQKTNGYEGWWAMEQWQKIGVVRLRQMR---------------PVDCHIGLGKPEWDKKTYAPE 243
            :.|    |.|:......:.:|..|:||:|               ...|:........|..:|.|.
Zfish  1462 FGQ----YPGFITDGNSKLVGNARIRQVRVKKDTCKVAKVMLHTVSQCNTPYSWGNEDMMSYGPG 1522

  Fly   244 WRLPYHRMHYTEK---FWRIYDPFVPAEFEPSFLNGLLLNYDHYGYLLNYPEVAGYVVLMMSTKI 305
            |. .::.::.:|:   .|:..        ..|.|..|.:    :|....| ...|||:.:...|.
Zfish  1523 WE-EFNSVNGSEEGITAWQYQ--------SQSTLKALPV----WGLTALY-RGGGYVMDLGPDKQ 1573

  Fly   306 NCLKQIEYLRDYSWLDKNTSALFIDLTMYNADANLFTLITLRVENSPFGIQLPRVHVDSVSMLGN 370
            |...:::||.:.:|||:.|.|:|::.|:|||:.:||.::||.:|:|..|....|..:.:||:..:
Zfish  1574 NATMKLQYLFNSTWLDEYTRAVFVEFTVYNANVDLFCIVTLILESSAVGAFQFRSVLQNVSLYSS 1638

  Fly   371 VETRSNSELLILFVYTVLVI--LFARGVFTK--IWHHPAAAHEAWTMVDLAIYILNVFLTVLAIM 431
            |.:..:..:....:|.:.|:  :|.:|...|  .|   |.....|.::|:||.||:.....|.|.
Zfish  1639 VGSFMSFLMASRVIYFLFVVYYMFLQGKLLKRQKW---AYFRNKWNLLDMAIIILSWSSLSLFIQ 1700

  Fly   432 RDIETDALLQIIETATKGQYLDFQRPLRLHQMLFIVKGFLVCITTLRLWKVLQFASVFQHFTQTL 496
            :.::.:..:|..: ..|.|:..|.....:...|..|..|||.:..::||.:|:.:........:|
Zfish  1701 KTVQGNIDIQYYQ-KHKNQFPSFHDTAAVDATLRYVMAFLVLLGCVKLWHLLRLSPKLYVIASSL 1764

  Fly   497 FSAWRAVASLGVIILVVLMAIGITLAVPNGNNAVVFSHMVQSVVTCMWYSMG-FNGDIHPADFFH 560
            ..||..:::|.|:|.::|:|..:...:..|.....:..:..:........:| ||.|    :..:
Zfish  1765 QRAWDDMSTLTVVIFIILLAYSLACNLIFGWELYTYRTLPDAFTAIFSLQIGIFNYD----EVMN 1825

  Fly   561 GGRILGILLYLALVFLLAIILMNVFASVIYDYFNETSRILKEHSNRSSITFLEFLHVEYADLFGD 625
            ....||.::..:.|.:...:::::|.|:|.....|..   :.|........:|.:.::....||.
Zfish  1826 SNPALGAVIISSCVLIATFVVLSLFISIILMAVTEER---ENHQPSEEEETVELVMMKIMSFFGI 1887

  Fly   626 AFRCLRKTYESRGH 639
            ..:...:|..:.||
Zfish  1888 KSKKKEETDHNPGH 1901

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv2NP_648970.2 PKD_channel 169..596 CDD:285288 98/449 (22%)
pkd1l2bXP_021333711.1 CLECT 33..150 CDD:153057
Gal_Lectin 164..245 CDD:307994
GPS 759..798 CDD:307782
PLAT_polycystin 869..988 CDD:238850
PKD_channel 1437..1860 CDD:332708 98/448 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10877
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.020

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