DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv2 and Pkd1l3

DIOPT Version :9

Sequence 1:NP_648970.2 Gene:brv2 / 39932 FlyBaseID:FBgn0036712 Length:736 Species:Drosophila melanogaster
Sequence 2:XP_038954217.1 Gene:Pkd1l3 / 100362565 RGDID:2324490 Length:2183 Species:Rattus norvegicus


Alignment Length:688 Identity:142/688 - (20%)
Similarity:267/688 - (38%) Gaps:174/688 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 CFVL---VSIFSGFMHEPQRFKTM-------------LVTIVLVFFFQYLILEPIR------FFI 66
            |::|   :|:.|.|      |.|:             :::::|.......|.:||:      .|.
  Rat  1525 CWLLLGVISLTSAF------FITLYSLELSRDQATSWVISMMLSVLQDIFICQPIKVIFLTLLFS 1583

  Fly    67 QSIDYATWPQEDPPYRAEE-----------------------GGPTMDHIGYLKIRLRSLRSELL 108
            ...::..|..:|..:.|..                       ..|.|:|:               
  Rat  1584 LMANHMPWLTKDKEHHARRIVALWAKCPSSAPGLRDKNNPIYTAPAMNHL--------------- 1633

  Fly   109 ISEGHTNEMLNQKYKHIAGDLLLYGSYFIALMLMVVLQEDHTNYYNTNNMQRLFWDNTSVTFGLS 173
              :..|.::..::...:....|:...:...||..|...:|.:.::    :.|..|...|      
  Rat  1634 --DRRTKKVWRKRLFLLTAGSLVQILFLTLLMTTVYSAKDSSRFF----LHRAVWKRFS------ 1686

  Fly   174 QVYFIYQVHSYMKITLVEAFY--AQKT------NGYEGWWAMEQWQKIGVVRLRQMR-------P 223
                    |.:.:|..||.||  |.:|      ..|.|:........:|.|.|||:|       |
  Rat  1687 --------HGFSEIKAVEDFYPWANRTLLPNLYGDYRGFITDGNSFLLGNVLLRQIRIPNDTHSP 1743

  Fly   224 VDCHIGLG---KPEWDKKTYAPEWRLPYHRMHYTEKFWRIYDPFVPAEFEPSFLNGLLLNYDHYG 285
            |..|..:.   :.:.|::.|...|..|...:...:..|...        .|..|.|    |...|
  Rat  1744 VSLHEHMNSYPQHQEDRENYGAGWVPPDTNITKADSIWHYQ--------SPESLGG----YPIQG 1796

  Fly   286 YLLNYPEVAGYVVLMMSTKINCLKQIEYLRDYSWLDKNTSALFIDLTMYNADANLFTLITLRVEN 350
            .:..| ...||||.:........:.:::|....|||..|.|||::.|::||:.||..::||.:|:
  Rat  1797 EVTTY-SGGGYVVRLGRNHSAATRVLQHLEQRHWLDHYTKALFVEFTVFNANVNLLCMVTLILES 1860

  Fly   351 SPFGIQLPRVHVDSVSMLGNVETRSNSELLILFVYTVLVILFA---------RGV--FTKIWHHP 404
            |..|.....:.:||::.|.:.| |..:.::....|.:||..:|         :|:  ||:     
  Rat  1861 SGVGTFFTSLRLDSLTSLQSSE-RGFAWIISQVAYYLLVCYYAFVQGCRLKRQGLAFFTR----- 1919

  Fly   405 AAAHEAWTMVDLAIYILNVFLTVLAIMRDIETDALLQIIETATKGQ--------YLDFQRPLRLH 461
                 ...::|.:| ||..| ::|.:  ::::.:||.     |..|        ::.|...||::
  Rat  1920 -----RRNILDTSI-ILTSF-SILGL--NMQSLSLLH-----TNMQQYRRDPDGFISFSEALRVN 1970

  Fly   462 QMLFIVKGFLVCITTLRLWKVLQFASVFQHFTQTLFSAWRAVASLGVIILVVLMAIGITLAVPNG 526
            .:...:.|||:...|:|:|.:|:..:..|...:||..||..|....:||:::|.:..:|..:..|
  Rat  1971 SVATHLMGFLLLFATVRVWDLLRHHARLQVINKTLTKAWDEVLGFIMIIMILLSSYAMTFNLLFG 2035

  Fly   527 NNAVVFSHMVQSVVTCMWYSMGFNGD-----IHPADFFHGGRILGILLYLALVFLLAIILMNVFA 586
            .:...:.....||||.:...:|....     :.|        :||..|.|:.:.|:.::::|:|.
  Rat  2036 WSISDYQSFFSSVVTVVGLLVGIPKHKEVVALSP--------VLGSFLVLSNIILMGLVIINLFV 2092

  Fly   587 SVIYDYFNETSRILKEHSNRSSITFLEFLHVEYADLFG 624
            |.|...|.:..:..::.:     |..:.|..:.:.|.|
  Rat  2093 SAILIVFGKERKACEKEA-----TLTDMLLQKLSSLLG 2125

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv2NP_648970.2 PKD_channel 169..596 CDD:285288 111/468 (24%)
Pkd1l3XP_038954217.1 CLECT 37..144 CDD:153057
Herpes_BLLF1 <215..601 CDD:282904
GPS 1002..1040 CDD:396408
PLAT_polycystin 1111..1230 CDD:238850
PKD_channel 1688..2096 CDD:400395 108/448 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10877
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

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