DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6512 and VAR2

DIOPT Version :9

Sequence 1:NP_730248.2 Gene:CG6512 / 39922 FlyBaseID:FBgn0036702 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001323509.1 Gene:VAR2 / 817646 AraportID:AT2G30950 Length:699 Species:Arabidopsis thaliana


Alignment Length:686 Identity:285/686 - (41%)
Similarity:384/686 - (55%) Gaps:90/686 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 ILLGAIG-AVVLVGSFAFFEMGY--KEISWKEFVNSYLSKGVVEKLEV---------------VN 210
            ||||..| .:|..|.....|.|.  ..:|:..|: .||.|..|.|:::               :.
plant    69 ILLGNAGVGLVASGKANADEQGVSSSRMSYSRFL-EYLDKDRVNKVDLYENGTIAIVEAVSPELG 132

  Fly   211 KKWVRVRLQQNSNSGSGVLWFNIGSVDSFERNLEAAQTEQGTESINFVPVIYRNEVEAASLTGLL 275
            .:..|||:|....|...:......::|....|   ||.:||:...|.:..:            ..
plant   133 NRVERVRVQLPGLSQELLQKLRAKNIDFAAHN---AQEDQGSVLFNLIGNL------------AF 182

  Fly   276 PTLLIIGFLVYMMRKSADMMGGGRGRKGGG----LFGGVMQSTAKLTNPNEIGVGFKDVAGCEEA 336
            |.|| ||.|..:.|:|    |||.|..||.    .||   ||.||.......||.|.||||.:||
plant   183 PALL-IGGLFLLSRRS----GGGMGGPGGPGNPLQFG---QSKAKFQMEPNTGVTFDDVAGVDEA 239

  Fly   337 KIEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF 401
            |.:.||.|.|||.|:::..:|||||||.:|.|||||||||||||.||||.|||.::|||||:|||
plant   240 KQDFMEVVEFLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304

  Fly   402 VGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRKRGGKTFGGHSEQENTLNQLLVEMDGFNTTTN 466
            ||||.|||||:|..|:::||||:|:||||||||:||....||:.|:|.||||||.|||||...|.
plant   305 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 369

  Fly   467 VVVLAATNRVDILDKALMRPGRFDRQIYVPAPDIKGRASIFKVHLGNLKTSLDKNELSRKMAAL- 530
            |:|:|||||.||||.||:||||||||:.|..||:|||..|.|||.||.|..   |::|.::.|: 
plant   370 VIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFD---NDVSLEIIAMR 431

  Fly   531 TPGFTGADIANVCNEAALIAARDSKDSIVLKHFEQAIERVIAGMEKKTNVLAPEEKRTVAHHEAG 595
            ||||:|||:||:.||||::|.|.::.||..|..:.:|:|::|||| .|.:...:.|..||:||.|
plant   432 TPGFSGADLANLLNEAAILAGRRARTSISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVG 495

  Fly   596 HAVAGWFLEHADPLLKVSIIPRGKGLGYAQYLPKDH-YLLSKEQLFDRMCMTLGGRVAEELFF-- 657
            |||.|......|.:.||::||||:..|...::|.|. .|:||:|||.|:...||||.|||:.|  
plant   496 HAVCGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGD 560

  Fly   658 NRITTGAQDDLKKITDIAYSQVVRFGMNEKVGQVSFDVGQAGDPVFSK-----PYSEDTAQLIDN 717
            :.:||||..||::||.:|...|..|||:: :|..|.....|...|..:     ..||..|:.||:
plant   561 SEVTTGAVGDLQQITGLARQMVTTFGMSD-IGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDS 624

  Fly   718 EVRSIIKCAHEATTSLLTKHKENVQKVAERLLQNEVLSRDDMIELLGPRPFKEKSTYEEFVEGTG 782
            .|:.:...|:|...|.:..::|.:.|:.|.||:.|.:..|:...:|           .||.|   
plant   625 AVKKLSDSAYEIALSHIKNNREAMDKLVEVLLEKETIGGDEFRAIL-----------SEFTE--- 675

  Fly   783 SFEEDTTLPEGLKSWNKEKERTEPLDAGSTPSSPPT 818
                   :|         .|...|....:||:|.||
plant   676 -------IP---------PENRVPSSTTTTPASAPT 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6512NP_730248.2 FtsH_ext 163..259 CDD:284011 28/112 (25%)
FtsH_fam 271..764 CDD:273520 245/505 (49%)
AAA 365..496 CDD:278434 92/130 (71%)
Peptidase_M41 580..762 CDD:279742 68/189 (36%)
VAR2NP_001323509.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0465
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D217929at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100384
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.680

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