DRSC/TRiP Functional Genomics Resources

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Protein Alignment Afg3l2 and psmc3

DIOPT Version :10

Sequence 1:NP_730248.2 Gene:Afg3l2 / 39922 FlyBaseID:FBgn0036702 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001006786.1 Gene:psmc3 / 448481 XenbaseID:XB-GENE-1009848 Length:423 Species:Xenopus tropicalis


Alignment Length:413 Identity:140/413 - (33%)
Similarity:200/413 - (48%) Gaps:69/413 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 KEISWKEFVNS---YLSKGVVEKLEVVNKKWVRVRLQQNSNSGSGVLWFNIGSVDSFERNLEAAQ 247
            ||.|.|..||.   ||...|:|.|:|          ..|.....|.   || .:|| :|..:.|.
 Frog    58 KENSEKIKVNKTLPYLVSNVIELLDV----------DPNDQEEDGA---NI-DLDS-QRKGKCAV 107

  Fly   248 TEQGTESINFVPVIYRNEVEAASLTGLLPTLLIIGFLVYMMRKSADMMGGGRGRKGGGLFGGVMQ 312
            .:..|....|:|||  ..|:|..|                              |.|.|.|....
 Frog   108 IKTSTRQTYFLPVI--GLVDAEKL------------------------------KPGDLVGVNKD 140

  Fly   313 STAKL-TNPNEIGVGFK-------------DVAGCEEAKIEIMEFVNF-LKNPQQYIDLGAKIPK 362
            |...| |.|.|.....|             |:.|.::...|::|.:.. :.:.:::.:||.:.||
 Frog   141 SYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPK 205

  Fly   363 GAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFAMARKHAPCILFID 427
            |.::.|||||||||||:|.|.:....|:.::|.:.::||:|.|...|||.||:|::.||.|:|||
 Frog   206 GVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 270

  Fly   428 EIDAVGRKRGGKTFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMRPGRFDRQ 492
            |:||:|.||......|..|.:.|:.:||.::|||...|.|.|:||||||||||.||:|.||.||:
 Frog   271 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRK 335

  Fly   493 IYVPAPDIKGRASIFKVHLGNLKTSLDKNELSRKMAALTPGFTGADIANVCNEAALIAARDSKDS 557
            |..|.|:.:.||.|.::|...:..|.|.|  ..::|..|..|.||....||.||.:||.|.....
 Frog   336 IEFPMPNEEARARIMQIHSRKMNVSPDVN--YEELARCTDDFNGAQCKAVCVEAGMIALRRGATE 398

  Fly   558 IVLKHFEQAIERVIAGMEKKTNV 580
            :..:.:.:.|..|.|  :||.|:
 Frog   399 LTHEDYMEGILEVQA--KKKANL 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Afg3l2NP_730248.2 HflB 168..765 CDD:440233 140/413 (34%)
psmc3NP_001006786.1 PRK03992 23..416 CDD:179699 137/408 (34%)

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