Protein Alignment Rbp6 and PUB1

DIOPT Version :10

• Sequence 1: NP_001097631.1
• Gene: Rbp6 / 39919
• FlyBaseID: FBgn0260943
• Length: 499
• Species: Drosophila melanogaster
• Sequence 2: NP_014382.1
• Gene: PUB1 / 855716
• SGDID: S000004961
• Length: 453
• Species: Saccharomyces cerevisiae
• Alignment Length: 449
• Identity: 99/449 - (22%)
• Similarity: 169/449 - (37%)
• Gaps: 101/449 - (22%)

  Fly     6 EQQQQQQQVELGPCSPSEVP--------------------------NDP----------GK---- 30
            :||||||.|.:...|..|.|                          |||          |:
Yeast    10 QQQQQQQPVAVETPSAVEAPASADPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSD 74

  Fly    31 --MFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHE 93
              :::|.|....:.:.|:.||...|.|:...:|.| ...::..:.||.:...:..:..|    ..
Yeast    75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIAL----QT 134

  Fly    94 LDGKKVD---PKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQT 155
            |:||:::   .|:.:..::.......|..:|||.|:.....|.:::.|:.|.......:|:|.||
Yeast   135 LNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT 199

  Fly   156 NRHRGFGFVTFQSEDVVDKVCE-IHFHEINNKMVECKKAQPKEVMLPANLAKTRAAGRSAYGELV 219
            ...||:|||:|.|:|......: :...::|.:.:....|..::.....|..:.|..|.:..|...
Yeast   200 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQRRNYGNNNRGGFR 264

  Fly   220 VWGSSHAH--------STAATSAAAAGLLPSSLAAAASVLQQQQQQQQQQQQQ-QQQQQQHHQQL 275
            .:.|::.:        :.......:.|:.|||:......:....|.|.||.|. ....|.:.|.:
Yeast   265 QYNSNNNNNMNMGMNMNMNMNMNNSRGMPPSSMGMPIGAMPLPSQGQPQQSQTIGLPPQVNPQAV 329

  Fly   276 HHTHPQSPAHSHAHH----PHTHSHSQLLG-------SLRYTPYP--------LPAHLSAAAVVV 321
            .|....:|......:    ||..:.:.|:.       .|.:..||        ...|..||..:|
Yeast   330 DHIIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIV 394

  Fly   322 A----------------QQQHHHQQQQQQQQQQ------QQQQVVAAQQQHQQQQSLAQ 358
            |                :::.:...|||||..|      |||.|::.|||.||||...|
Yeast   395 ALANFPFQGRNLRTGWGKERSNFMPQQQQQGGQPLIMNDQQQPVMSEQQQQQQQQQQQQ 453

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp6	NP_001097631.1	RRM1_MSI	30..105	CDD:409990	16/83 (19%)
		RRM2_MSI	119..192	CDD:240769	20/73 (27%)
PUB1	NP_014382.1	RRM1_PUB1	77..150	CDD:410026	16/77 (21%)
		RRM2_PUB1	161..240	CDD:410031	22/78 (28%)
		RRM3_PUB1	341..414	CDD:410033	11/72 (15%)