Protein Alignment Rbp6 and AT1G20880

DIOPT Version :10

• Sequence 1: NP_001097631.1
• Gene: Rbp6 / 39919
• FlyBaseID: FBgn0260943
• Length: 499
• Species: Drosophila melanogaster
• Sequence 2: NP_564127.1
• Gene: AT1G20880 / 838681
• AraportID: AT1G20880
• Length: 274
• Species: Arabidopsis thaliana
• Alignment Length: 350
• Identity: 83/350 - (23%)
• Similarity: 122/350 - (34%)
• Gaps: 117/350 - (33%)

  Fly    18 PCSPSEVPNDP------GKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVT 76
            |.|.....|.|      .|:|:|||:|:|..|:||.:|.:||||.||:|:.|..|.||:|:||||
plant     7 PSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVT 71

  Fly    77 FSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMV----------TRTKKIFVGGLSAPTTL 131
            |.||.:..:.....|..:||::.:..:|...|:.|.|.          .|....:||.:.:|
plant    72 FRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQSP--- 133

  Fly   132 EDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHF--HEINNKMVECKKAQ 194
                                       ||                 :||  |..:         |
plant   134 ---------------------------RG-----------------LHFGSHPYH---------Q 145

  Fly   195 P------KEVMLPANLAKTRAAGRSAYGELVVWGSSHAHSTAATSAAAAGLLPSSLAAAASVLQQ 253
            |      :.|:.|             || :..:|..:.:|             .|.......:.|
plant   146 PPTYNYQQGVVYP-------------YG-VTPYGPDYMYS-------------QSQGFYGPYMGQ 183

  Fly   254 QQQQQQQQQQQQQQQQQHHQQLHHTHPQSPAHSHA---HHPHTHSHSQLLG-----SLRYTPYPL 310
            |..|..............:.||.||.|  .||.:.   .:.|..||...||     |...:|||.
plant   184 QYLQVYGVPGAVNSPGYQYGQLSHTIP--GAHGYTAGQGYSHPGSHVLQLGATSPMSAIQSPYPS 246

  Fly   311 PAHLSAAAVVVAQQQHHHQQQQQQQ 335
            |:..:...|:|.....:.|.....|
plant   247 PSAPTHQRVIVQTPPQYIQSSGSDQ 271

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp6	NP_001097631.1	RRM1_MSI	30..105	CDD:409990	33/74 (45%)
		RRM2_MSI	119..192	CDD:240769	8/74 (11%)
AT1G20880	NP_564127.1	RRM_RBM24_RBM38_like	24..99	CDD:409818	33/74 (45%)
		PABP-1234	<37..246	CDD:130689	66/293 (23%)