DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp6 and RBP45B

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_172630.1 Gene:RBP45B / 837708 AraportID:AT1G11650 Length:405 Species:Arabidopsis thaliana


Alignment Length:404 Identity:85/404 - (21%)
Similarity:131/404 - (32%) Gaps:158/404 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KIEQQQQQQQVE----------------LGPCSPSEVPNDPGKMFIGGLSWQT---------SPE 43
            |:.:.:|..|||                |...:.:.:|:.|.::|  .|:|.:         ||:
plant    92 KVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLF--RLNWASLSSGDKRDDSPD 154

  Fly    44 ----------SLRDYF------GRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTH 92
                      .:.||.      ..|..:..|.|:.|..|.|::|:|||.|||.:...:.:|    
plant   155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT---- 215

  Fly    93 ELDGKKVDPKVAFPRRAHP----KMVT-------------------RTKKIFVGGLSAPTTLEDV 134
            |::|.   |....|.|..|    |.||                   ....:|||||.|..|.:.:
plant   216 EMNGV---PCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHL 277

  Fly   135 KSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVM 199
            |:.|.|:|.|....:...|:.      |||.|..:...::...:    :|.            |.
plant   278 KNVFSQYGEIVHVKIPAGKRC------GFVQFSEKSCAEEALRM----LNG------------VQ 320

  Fly   200 LPANLAKTRAAGRSAYGELVVWGSSHAHSTAATSAAAAGLLPSSLAAAASVLQQQQQQQQQQQQQ 264
            |.....:            :.||.|                ||:           :|.....|..
plant   321 LGGTTVR------------LSWGRS----------------PSN-----------KQSGDPSQFY 346

  Fly   265 QQQQQQHHQQLHHTHPQSPAHSHAHHPHTHSHSQLLGSLRYTPYPLPAHLSAAAVVVAQQQHHHQ 329
            .....|..:|..:|.||.|   :|:: ..:|.....|..:.||                    ..
plant   347 YGGYGQGQEQYGYTMPQDP---NAYY-GGYSGGGYSGGYQQTP--------------------QA 387

  Fly   330 QQQQQQQQQQQQQV 343
            .||..||..|||||
plant   388 GQQPPQQPPQQQQV 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 24/99 (24%)
RRM2_MSI 119..192 CDD:240769 18/72 (25%)
RBP45BNP_172630.1 RRM1_SECp43_like 63..142 CDD:409780 11/51 (22%)
RRM2_SECp43_like 154..233 CDD:409781 22/85 (26%)
RRM_SF 260..331 CDD:473069 20/104 (19%)

Return to query results.
Submit another query.