DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and ATRBP45C

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_567764.1 Gene:ATRBP45C / 828808 AraportID:AT4G27000 Length:415 Species:Arabidopsis thaliana


Alignment Length:354 Identity:72/354 - (20%)
Similarity:117/354 - (33%) Gaps:114/354 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 EQQQQQQQVELGPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYF-GRYGDISEAMVMKDPTTRRS 69
            ||..:....:||.....:.......:|:|.|:...:...|.:.| ..|..:..|.|:.|.||.||
plant   150 EQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRS 214

  Fly    70 RGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHP----KMVT--------------- 115
            :|:|||.|:|.:...:.:|    |::|:....:   |.|..|    |.:|               
plant   215 KGYGFVRFADESEQIRAMT----EMNGQYCSSR---PMRTGPAANKKPLTMQPASYQNTQGNSGE 272

  Fly   116 ---RTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
               ....||||.:....|.:|:||.|.|||.:....:...|:.      |||.:.:....::...
plant   273 SDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRC------GFVQYANRACAEQALS 331

  Fly   178 IHFHEINNKMVECKKAQPKEVMLPANLAKTRAAGRSAYGELVVWGSSHAHSTAATSAAAAGLLPS 242
            :                         |..|:..|:|.   .:.||.|                ||
plant   332 V-------------------------LNGTQLGGQSI---RLSWGRS----------------PS 352

  Fly   243 SLAAAASVLQQQQQQQQQQQQQQQQQQQHHQQLHHTHPQSPAHSHAHHPHTHSHSQLLGSLR--- 304
            :                 :|.|..|.|......::.:|.....::.:.|.....:...|...   
plant   353 N-----------------KQTQPDQAQYGGGGGYYGYPPQGYEAYGYAPPPQDPNAYYGGYAGGG 400

  Fly   305 YTPYPLPAHLSAAAVVVAQQQHHHQQQQQ 333
            |..|              ||...:|||||
plant   401 YGNY--------------QQPGGYQQQQQ 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 22/75 (29%)
RRM2_MSI 119..192 CDD:240769 16/72 (22%)
ATRBP45CNP_567764.1 RRM1_SECp43_like 81..158 CDD:409780 2/7 (29%)
RRM2_SECp43_like 172..251 CDD:409781 25/85 (29%)
RRM_SF 277..348 CDD:473069 20/104 (19%)

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