DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp6 and PHIP1

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_191094.1 Gene:PHIP1 / 824700 AraportID:AT3G55340 Length:597 Species:Arabidopsis thaliana


Alignment Length:260 Identity:61/260 - (23%)
Similarity:108/260 - (41%) Gaps:33/260 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IEQQQQQQQVELGPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRS 69
            :|::.:.:::|:...:..|....|.|:::||:.:|::.:.:|.||...|.|.:......|.....
plant   137 VEEKVKVEEIEVNTDNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAF 201

  Fly    70 RGFGFVTFSDPNSVDKVL-----TQGTHELD----GKKVDPKVAFPRRA-----HPKMVTRTKKI 120
            .|..|:||...:...:.|     ..|...|.    .|...|.:  |||.     .|:||....::
plant   202 SGIAFITFDTEDGAKRALAFDRAAMGDRYLTIQQYVKTTTPSI--PRRKTSSGFAPEMVDGYNRV 264

  Fly   121 FVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINN 185
            ::|.|:..||..|::..|... .|....|..:|:|...:|:..|.|:....|....::      :
plant   265 YIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKL------D 322

  Fly   186 KMVECKKAQPKEVMLPANLAKTRAAGRSAYGELVVWGSSHAHSTAATSAAAAGLLPSSLAAAASV 250
            :.|.|  .:|.::..   ..|.|.|.....||....||.:...|    .|||..:| :||..:.|
plant   323 QQVIC--GRPVKICC---ALKDRPATDHTPGETNNAGSYNMEDT----YAAADPVP-ALAGRSEV 377

  Fly   251  250
            plant   378  377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 19/83 (23%)
RRM2_MSI 119..192 CDD:240769 16/72 (22%)
PHIP1NP_191094.1 RRM1_PHIP1 163..234 CDD:409714 16/70 (23%)
RRM2_PHIP1 263..334 CDD:409715 17/79 (22%)
PTZ00368 393..592 CDD:173561
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.