DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp6 and ATRZ-1A

DIOPT Version :10

Sequence 1:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_189273.1 Gene:ATRZ-1A / 822246 AraportID:AT3G26420 Length:245 Species:Arabidopsis thaliana


Alignment Length:84 Identity:35/84 - (41%)
Similarity:51/84 - (60%) Gaps:2/84 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 DPG-KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDK-VLTQ 89
            ||. :.|||||:|.||...|||.|.:||.:.||.|:.|..:.|||||||:||.:..::|: :...
plant     4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAM 68

  Fly    90 GTHELDGKKVDPKVAFPRR 108
            ...:|||:.:....|.|.:
plant    69 NGMDLDGRTITVDKAQPHQ 87

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990 31/75 (41%)
RRM2_MSI 119..192 CDD:240769
ATRZ-1ANP_189273.1 RRM2_NsCP33_like 8..83 CDD:410187 31/74 (42%)
ZnF_C2HC 120..135 CDD:197667
U2AF_lg 136..>242 CDD:273727
PRK04537 <208..240 CDD:235307
Blue background indicates that the domain is not in the aligned region.

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